Alignment Stats
| Sequence pairs analysed in total |
75321697 |
| Paired-end alignments with a unique best hit |
45769591 |
| Pairs without alignments under any condition |
17726228 |
| Pairs that did not map uniquely |
11825878 |
| Genomic sequence context not extractable (edges of chromosomes) |
85 |
|
|
Cytosine Methylation
| Total C's analysed |
1601850100 |
| Methylated C's in CpG context |
21471982 |
| Methylated C's in CHG context |
1356883 |
| Methylated C's in CHH context |
5810020 |
| Methylated C's in Unknown context |
54542 |
| Unmethylated C's in CpG context |
186450650 |
| Unmethylated C's in CHG context |
277897763 |
| Unmethylated C's in CHH context |
1108862802 |
| Unmethylated C's in Unknown context |
3983886 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11411558 |
original top strand |
| CTOT |
11429132 |
complementary to original top strand |
| CTOB |
11471646 |
complementary to original bottom strand |
| OB |
11457170 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
45769506 |
| Unique alignments |
37464413 |
| Duplicates removed |
8305093 |
| Duplicated alignments were found at 6947758 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
910669092 |
| Methylated C's in CpG context |
11841329 |
| Methylated C's in CHG context |
760115 |
| Methylated C's in CHH context |
3288745 |
| Unmethylated C's in CpG context |
104532651 |
| Unmethylated C's in CHG context |
156229733 |
| Unmethylated C's in CHH context |
634016519 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
