zr3534_3_R1.fastp-trim.20201202_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 39133069 lines in total Total number of methylation call strings processed: 78266138 Final Cytosine Methylation Report ================================= Total number of C's analysed: 966714974 Total methylated C's in CpG context: 14292801 Total methylated C's in CHG context: 833216 Total methylated C's in CHH context: 3552711 Total C to T conversions in CpG context: 109585647 Total C to T conversions in CHG context: 165674993 Total C to T conversions in CHH context: 672775606 C methylated in CpG context: 11.5% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%