Alignment Stats
| Sequence pairs analysed in total |
75413899 |
| Paired-end alignments with a unique best hit |
46140925 |
| Pairs without alignments under any condition |
17015547 |
| Pairs that did not map uniquely |
12257427 |
| Genomic sequence context not extractable (edges of chromosomes) |
102 |
|
|
Cytosine Methylation
| Total C's analysed |
1612045578 |
| Methylated C's in CpG context |
21945879 |
| Methylated C's in CHG context |
1370392 |
| Methylated C's in CHH context |
5818112 |
| Methylated C's in Unknown context |
53662 |
| Unmethylated C's in CpG context |
190060088 |
| Unmethylated C's in CHG context |
281860222 |
| Unmethylated C's in CHH context |
1110990885 |
| Unmethylated C's in Unknown context |
3919471 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11482323 |
original top strand |
| CTOT |
11541123 |
complementary to original top strand |
| CTOB |
11582832 |
complementary to original bottom strand |
| OB |
11534545 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
46140823 |
| Unique alignments |
37693953 |
| Duplicates removed |
8446870 |
| Duplicated alignments were found at 7047577 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
911253744 |
| Methylated C's in CpG context |
12014863 |
| Methylated C's in CHG context |
763389 |
| Methylated C's in CHH context |
3276821 |
| Unmethylated C's in CpG context |
105812698 |
| Unmethylated C's in CHG context |
157435632 |
| Unmethylated C's in CHH context |
631950341 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
|
|
