Alignment Stats
| Sequence pairs analysed in total |
76522716 |
| Paired-end alignments with a unique best hit |
47127724 |
| Pairs without alignments under any condition |
17253197 |
| Pairs that did not map uniquely |
12141795 |
| Genomic sequence context not extractable (edges of chromosomes) |
96 |
|
|
Cytosine Methylation
| Total C's analysed |
1636781777 |
| Methylated C's in CpG context |
22358259 |
| Methylated C's in CHG context |
1394261 |
| Methylated C's in CHH context |
5914275 |
| Methylated C's in Unknown context |
52616 |
| Unmethylated C's in CpG context |
191433820 |
| Unmethylated C's in CHG context |
285827469 |
| Unmethylated C's in CHH context |
1129853693 |
| Unmethylated C's in Unknown context |
3992972 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11765055 |
original top strand |
| CTOT |
11788130 |
complementary to original top strand |
| CTOB |
11797392 |
complementary to original bottom strand |
| OB |
11777051 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
47127628 |
| Unique alignments |
38388821 |
| Duplicates removed |
8738807 |
| Duplicated alignments were found at 7320561 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
923441134 |
| Methylated C's in CpG context |
12160729 |
| Methylated C's in CHG context |
771829 |
| Methylated C's in CHH context |
3314006 |
| Unmethylated C's in CpG context |
106774410 |
| Unmethylated C's in CHG context |
159361439 |
| Unmethylated C's in CHH context |
641058721 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
