zr3534_10_R1.fastp-trim.20201202_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 39146855 lines in total Total number of methylation call strings processed: 78293710 Final Cytosine Methylation Report ================================= Total number of C's analysed: 942295272 Total methylated C's in CpG context: 12005773 Total methylated C's in CHG context: 727974 Total methylated C's in CHH context: 3110667 Total C to T conversions in CpG context: 110469959 Total C to T conversions in CHG context: 163950124 Total C to T conversions in CHH context: 652030775 C methylated in CpG context: 9.8% C methylated in CHG context: 0.4% C methylated in CHH context: 0.5%