File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated chgs Unmethylated chgs Methylated CHHs Unmethylated CHHs zr3534_10_R1.fastp-trim.20201202_bismark_bt2_pe.bam 77576026 48007551 16783783 12784569 123 8860696 39146855 942295272 12005773 110469959 727974 163950124 3110667 652030775 zr3534_1_R1.fastp-trim.20201202_bismark_bt2_pe.bam 76522716 47127628 17253197 12141795 96 8738807 38388821 923441134 12160729 106774410 771829 159361439 3314006 641058721 zr3534_2_R1.fastp-trim.20201202_bismark_bt2_pe.bam 75413899 46140823 17015547 12257427 102 8446870 37693953 911253744 12014863 105812698 763389 157435632 3276821 631950341 zr3534_3_R1.fastp-trim.20201202_bismark_bt2_pe.bam 78091157 47623611 18311792 12155660 94 8490542 39133069 966714974 14292801 109585647 833216 165674993 3552711 672775606 zr3534_4_R1.fastp-trim.20201202_bismark_bt2_pe.bam 74728031 45908079 16768986 12050864 102 8215841 37692238 905767036 12781614 103354653 771949 155896761 3313636 629648423 zr3534_5_R1.fastp-trim.20201202_bismark_bt2_pe.bam 84046138 51605329 18775249 13665429 131 9670187 41935142 1001853984 14205083 114075011 857017 172180736 3688422 696847715 zr3534_6_R1.fastp-trim.20201202_bismark_bt2_pe.bam 75321697 45769506 17726228 11825878 85 8305093 37464413 910669092 11841329 104532651 760115 156229733 3288745 634016519 zr3534_7_R1.fastp-trim.20201202_bismark_bt2_pe.bam 66080050 40369936 15234187 10475817 110 6665992 33703944 815274441 10242157 93016354 682349 139619354 2962714 568751513 zr3534_8_R1.fastp-trim.20201202_bismark_bt2_pe.bam 90605411 55543449 20159676 14902154 132 11447130 44096319 1036370828 13257071 118387681 856075 177358593 3718164 722793244 zr3534_9_R1.fastp-trim.20201202_bismark_bt2_pe.bam 73776588 45591458 16002262 12182748 120 7999205 37592253 903220750 11490959 105465948 711903 157214343 3019557 625318040