*** Bismark methylation extractor version v0.21.0 *** Trying to determine the type of mapping from the SAM header line of file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Treating file(s) as paired-end data (as extracted from @PG line) Setting option '--no_overlap' since this is (normally) the right thing to do for paired-end data Summarising Bismark methylation extractor parameters: =============================================================== Bismark paired-end SAM format specified (default) Number of cores to be used: 14 Output will be written to the current directory ('/gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup') Summarising bedGraph parameters: =============================================================== Generating additional output in bedGraph and coverage format bedGraph format: coverage format: Using a cutoff of 1 read(s) to report cytosine positions Reporting and sorting cytosine methylation information in CpG context only (default) The bedGraph UNIX sort command will use the following memory setting: '75%'. Temporary directory used for sorting is the output directory Checking file >>Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file >Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context from the original top strand to CpG_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the complementary to original top strand to CpG_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the complementary to original bottom strand to CpG_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the original bottom strand to CpG_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the original top strand to CHG_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the complementary to original top strand to CHG_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the complementary to original bottom strand to CHG_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the original bottom strand to CHG_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the original top strand to CHH_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the complementary to original top strand to CHH_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the complementary to original bottom strand to CHH_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the original bottom strand to CHH_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:1 LN:3259165 skipping SAM header line: @SQ SN:2 LN:3468816 skipping SAM header line: @SQ SN:3 LN:700192 skipping SAM header line: @SQ SN:4 LN:2934407 skipping SAM header line: @SQ SN:5 LN:2430108 skipping SAM header line: @SQ SN:6 LN:2758956 skipping SAM header line: @SQ SN:7 LN:2199593 skipping SAM header line: @SQ SN:8 LN:63180 skipping SAM header line: @SQ SN:9 LN:2265284 skipping 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LN:599720 skipping SAM header line: @SQ SN:434 LN:599950 skipping SAM header line: @SQ SN:435 LN:111371 skipping SAM header line: @SQ SN:436 LN:595002 skipping SAM header line: @SQ SN:437 LN:566460 skipping SAM header line: @SQ SN:438 LN:595148 skipping SAM header line: @SQ SN:439 LN:588360 skipping SAM header line: @SQ SN:440 LN:490454 skipping SAM header line: @SQ SN:441 LN:600678 skipping SAM header line: @SQ SN:442 LN:600084 skipping SAM header line: @SQ SN:443 LN:574125 skipping SAM header line: @SQ SN:444 LN:587509 skipping SAM header line: @SQ SN:445 LN:587594 skipping SAM header line: @SQ SN:446 LN:596445 skipping SAM header line: @SQ SN:447 LN:536900 skipping SAM header line: @SQ SN:448 LN:586986 skipping SAM header line: @SQ SN:449 LN:530954 skipping SAM header line: @SQ SN:450 LN:501158 skipping SAM header line: @SQ SN:451 LN:583793 skipping SAM header line: @SQ SN:452 LN:578365 skipping SAM header line: @SQ SN:453 LN:582895 skipping SAM header line: @SQ SN:454 LN:578969 skipping SAM header line: @SQ SN:455 LN:581618 skipping SAM header line: @SQ SN:456 LN:510952 skipping SAM header line: @SQ SN:457 LN:580424 skipping SAM header line: @SQ SN:458 LN:581303 skipping SAM header line: @SQ SN:459 LN:573012 skipping SAM header line: @SQ SN:460 LN:578425 skipping SAM header line: @SQ SN:461 LN:566703 skipping SAM header line: @SQ SN:462 LN:579403 skipping SAM header line: @SQ SN:463 LN:584138 skipping SAM header line: @SQ SN:464 LN:575617 skipping SAM header line: @SQ SN:465 LN:572581 skipping SAM header line: @SQ SN:466 LN:534558 skipping SAM header line: @SQ SN:467 LN:517773 skipping SAM header line: @SQ SN:468 LN:71509 skipping SAM header line: @SQ SN:469 LN:551605 skipping SAM header line: @SQ SN:470 LN:551149 skipping SAM header line: @SQ SN:471 LN:558920 skipping SAM header line: @SQ SN:472 LN:569790 skipping SAM header line: @SQ SN:473 LN:575543 skipping SAM header line: @SQ SN:474 LN:570375 skipping SAM header line: @SQ SN:475 LN:570020 skipping SAM header line: @SQ SN:476 LN:569037 skipping SAM header line: @SQ SN:477 LN:568945 skipping SAM header line: @SQ SN:478 LN:567414 skipping SAM header line: @SQ SN:479 LN:567422 skipping SAM header line: @SQ SN:480 LN:565746 skipping SAM header line: @SQ SN:481 LN:558202 skipping SAM header line: @SQ SN:482 LN:560620 skipping SAM header line: @SQ SN:483 LN:576607 skipping SAM header line: @SQ SN:484 LN:547167 skipping SAM header line: @SQ SN:485 LN:559992 skipping SAM header line: @SQ SN:486 LN:524518 skipping SAM header line: @SQ SN:487 LN:579447 skipping SAM header line: @SQ SN:488 LN:463101 skipping SAM header line: @SQ SN:489 LN:552563 skipping SAM header line: @SQ SN:490 LN:538328 skipping SAM header line: @SQ SN:491 LN:556977 skipping SAM header line: @SQ SN:492 LN:569539 skipping SAM header line: @SQ SN:493 LN:571496 skipping SAM header line: @SQ SN:494 LN:552813 skipping SAM header line: @SQ SN:495 LN:560492 skipping SAM header line: @SQ SN:496 LN:97609 skipping SAM header line: @SQ SN:497 LN:540623 skipping SAM header line: @SQ SN:498 LN:528357 skipping SAM header line: @SQ SN:499 LN:547607 skipping SAM header line: @SQ SN:500 LN:530179 skipping SAM header line: @SQ SN:501 LN:500029 skipping SAM header line: @SQ SN:502 LN:53510 skipping SAM header line: @SQ SN:503 LN:544824 skipping SAM header line: @SQ SN:504 LN:545115 skipping SAM header line: @SQ SN:505 LN:555815 skipping SAM header line: @SQ SN:506 LN:570396 skipping SAM header line: @SQ SN:507 LN:539574 skipping SAM header line: @SQ SN:508 LN:538865 skipping SAM header line: @SQ SN:509 LN:537929 skipping SAM header line: @SQ SN:510 LN:519071 skipping SAM header line: @SQ SN:511 LN:523199 skipping SAM header line: @SQ SN:512 LN:538148 skipping SAM header line: @SQ SN:513 LN:202321 skipping SAM header line: @SQ SN:514 LN:536663 skipping SAM header line: @SQ SN:515 LN:531172 skipping SAM header line: @SQ SN:516 LN:533537 skipping SAM header line: @SQ SN:517 LN:531129 skipping SAM header line: @SQ SN:518 LN:440934 skipping SAM header line: @SQ SN:519 LN:485156 skipping SAM header line: @SQ SN:520 LN:273908 skipping SAM header line: @SQ SN:521 LN:527752 skipping SAM header line: @SQ SN:522 LN:512991 skipping SAM header line: @SQ SN:523 LN:533526 skipping SAM header line: @SQ SN:524 LN:530815 skipping SAM header line: @SQ SN:525 LN:530007 skipping SAM header line: @SQ SN:526 LN:574263 skipping SAM header line: @SQ SN:527 LN:529636 skipping SAM header line: @SQ SN:528 LN:517086 skipping SAM header line: @SQ SN:529 LN:532209 skipping SAM header line: @SQ SN:530 LN:549308 skipping SAM header line: @SQ SN:531 LN:525903 skipping SAM header line: @SQ SN:532 LN:119706 skipping SAM header line: @SQ SN:533 LN:513614 skipping SAM header line: @SQ SN:534 LN:504850 skipping SAM header line: @SQ SN:535 LN:517574 skipping SAM header line: @SQ SN:536 LN:87592 skipping SAM header line: @SQ SN:537 LN:520353 skipping SAM header line: @SQ SN:538 LN:521348 skipping SAM header line: @SQ SN:539 LN:530593 skipping SAM header line: @SQ SN:540 LN:495380 skipping SAM header line: @SQ SN:541 LN:425043 skipping SAM header line: @SQ SN:542 LN:530805 skipping SAM header line: @SQ SN:543 LN:514973 skipping SAM header line: @SQ SN:544 LN:522518 skipping SAM header line: @SQ SN:545 LN:543214 skipping SAM header line: @SQ SN:546 LN:534800 skipping SAM header line: @SQ SN:547 LN:502851 skipping SAM header line: @SQ SN:548 LN:483827 skipping SAM header line: @SQ SN:549 LN:512847 skipping SAM header line: @SQ SN:550 LN:511675 skipping SAM header line: @SQ SN:551 LN:514580 skipping SAM header line: @SQ SN:552 LN:539493 skipping SAM header line: @SQ SN:553 LN:507885 skipping SAM header line: @SQ SN:554 LN:515365 skipping SAM header line: @SQ SN:555 LN:469598 skipping SAM header line: @SQ SN:556 LN:481181 skipping SAM header line: @SQ SN:557 LN:508295 skipping SAM header line: @SQ SN:558 LN:503205 skipping SAM header line: @SQ SN:559 LN:507269 skipping SAM header line: @SQ SN:560 LN:499689 skipping SAM header line: @SQ SN:561 LN:499996 skipping SAM header line: @SQ SN:562 LN:508243 skipping SAM header line: @SQ SN:563 LN:500844 skipping SAM header line: @SQ SN:564 LN:508062 skipping SAM header line: @SQ SN:565 LN:501448 skipping SAM header line: @SQ SN:566 LN:474183 skipping SAM header line: @SQ SN:567 LN:367063 skipping SAM header line: @SQ SN:568 LN:498357 skipping SAM header line: @SQ SN:569 LN:513150 skipping SAM header line: @SQ SN:570 LN:498906 skipping SAM header line: @SQ SN:571 LN:498700 skipping SAM header line: @SQ SN:572 LN:472164 skipping SAM header line: @SQ SN:573 LN:507436 skipping SAM header line: @SQ SN:574 LN:505070 skipping SAM header line: @SQ SN:575 LN:497506 skipping SAM header line: @SQ SN:576 LN:496180 skipping SAM header line: @SQ SN:577 LN:495190 skipping SAM header line: @SQ SN:578 LN:486825 skipping SAM header line: @SQ SN:579 LN:491352 skipping SAM header line: @SQ SN:580 LN:493215 skipping SAM header line: @SQ SN:581 LN:502157 skipping SAM header line: @SQ SN:582 LN:507220 skipping SAM header line: @SQ SN:583 LN:491273 skipping SAM header line: @SQ SN:584 LN:488168 skipping SAM header line: @SQ SN:585 LN:490515 skipping SAM header line: @SQ SN:586 LN:448915 skipping SAM header line: @SQ SN:587 LN:491040 skipping SAM header line: @SQ SN:588 LN:102780 skipping SAM header line: @SQ SN:589 LN:491591 skipping SAM header line: @SQ SN:590 LN:485753 skipping SAM header line: @SQ SN:591 LN:485704 skipping SAM header line: @SQ SN:592 LN:485033 skipping SAM header line: @SQ SN:593 LN:481401 skipping SAM header line: @SQ SN:594 LN:502831 skipping SAM header line: @SQ SN:595 LN:483572 skipping SAM header line: @SQ SN:596 LN:44697 skipping SAM header line: @SQ SN:597 LN:483527 skipping SAM header line: @SQ SN:598 LN:480775 skipping SAM header line: @SQ SN:599 LN:475985 skipping SAM header line: @SQ SN:600 LN:474163 skipping SAM header line: @SQ SN:601 LN:55408 skipping SAM header line: @SQ SN:602 LN:313213 skipping SAM header line: @SQ SN:603 LN:482861 skipping SAM header line: @SQ SN:604 LN:477177 skipping SAM header line: @SQ SN:605 LN:477769 skipping SAM header line: @SQ SN:606 LN:474382 skipping SAM header line: @SQ SN:607 LN:474193 skipping SAM header line: @SQ SN:608 LN:427787 skipping SAM header line: @SQ SN:609 LN:455860 skipping SAM header line: @SQ SN:610 LN:480570 skipping SAM header line: @SQ SN:611 LN:469516 skipping SAM header line: @SQ SN:612 LN:478916 skipping SAM header line: @SQ SN:613 LN:459886 skipping SAM header line: @SQ SN:614 LN:448698 skipping SAM header line: @SQ SN:615 LN:469093 skipping SAM header line: @SQ SN:616 LN:470170 skipping SAM header line: @SQ SN:617 LN:466607 skipping SAM header line: @SQ SN:618 LN:409627 skipping SAM header line: @SQ SN:619 LN:475660 skipping SAM header line: @SQ SN:620 LN:460872 skipping SAM header line: @SQ SN:621 LN:474897 skipping SAM header line: @SQ SN:622 LN:463119 skipping SAM header line: @SQ SN:623 LN:481900 skipping SAM header line: @SQ SN:624 LN:464739 skipping SAM header line: @SQ SN:625 LN:460648 skipping SAM header line: @SQ SN:626 LN:469521 skipping SAM header line: @SQ SN:627 LN:462935 skipping SAM header line: @SQ SN:628 LN:456398 skipping SAM header line: @SQ SN:629 LN:461014 skipping SAM header line: @SQ SN:630 LN:464462 skipping SAM header line: @SQ SN:631 LN:463768 skipping SAM header line: @SQ SN:632 LN:451112 skipping SAM header line: @SQ SN:633 LN:449639 skipping SAM header line: @SQ SN:634 LN:459764 skipping SAM header line: @SQ SN:635 LN:468137 skipping SAM header line: @SQ SN:636 LN:472955 skipping SAM header line: @SQ SN:637 LN:448732 skipping SAM header line: @SQ SN:638 LN:444434 skipping SAM header line: @SQ SN:639 LN:456211 skipping SAM header line: @SQ SN:640 LN:453683 skipping SAM header line: @SQ SN:641 LN:455740 skipping SAM header line: @SQ SN:642 LN:455536 skipping SAM header line: @SQ SN:643 LN:456391 skipping SAM header line: @SQ SN:644 LN:461110 skipping SAM header line: @SQ SN:645 LN:450701 skipping SAM header line: @SQ SN:646 LN:448049 skipping SAM header line: @SQ SN:647 LN:450857 skipping SAM header line: @SQ SN:648 LN:453200 skipping SAM header line: @SQ SN:649 LN:452056 skipping SAM header line: @SQ SN:650 LN:347654 skipping SAM header line: @SQ SN:651 LN:474497 skipping SAM header line: @SQ SN:652 LN:449026 skipping SAM header line: @SQ SN:653 LN:449685 skipping SAM header line: @SQ SN:654 LN:450282 skipping SAM header line: @SQ SN:655 LN:356288 skipping SAM header line: @SQ SN:656 LN:425557 skipping SAM header line: @SQ SN:657 LN:449128 skipping SAM header line: @SQ SN:658 LN:448219 skipping SAM header line: @SQ SN:659 LN:452944 skipping SAM header line: @SQ SN:660 LN:456621 skipping SAM header line: @SQ SN:661 LN:437033 skipping SAM header line: @SQ SN:662 LN:447083 skipping SAM header line: @SQ SN:663 LN:453111 skipping SAM header line: @SQ SN:664 LN:426810 skipping SAM header line: @SQ SN:665 LN:445139 skipping SAM header line: @SQ SN:666 LN:445066 skipping SAM header line: @SQ SN:667 LN:444892 skipping SAM header line: @SQ SN:668 LN:448521 skipping SAM header line: @SQ SN:669 LN:443692 skipping SAM header line: @SQ SN:670 LN:391903 skipping SAM header line: @SQ SN:671 LN:423152 skipping SAM header line: @SQ SN:672 LN:403722 skipping SAM header line: @SQ SN:673 LN:418819 skipping SAM header line: @SQ SN:674 LN:432438 skipping SAM header line: @SQ SN:675 LN:438917 skipping SAM header line: @SQ SN:676 LN:147096 skipping SAM header line: @SQ SN:677 LN:436480 skipping SAM header line: @SQ SN:678 LN:436231 skipping SAM header line: @SQ SN:679 LN:427776 skipping SAM header line: @SQ SN:680 LN:425854 skipping SAM header line: @SQ SN:681 LN:435429 skipping SAM header line: @SQ SN:682 LN:437488 skipping SAM header line: @SQ SN:683 LN:446216 skipping SAM header line: @SQ SN:684 LN:424550 skipping SAM header line: @SQ SN:685 LN:182265 skipping SAM header line: @SQ SN:686 LN:433824 skipping SAM header line: @SQ SN:687 LN:741164 skipping SAM header line: @SQ SN:688 LN:427018 skipping SAM header line: @SQ SN:689 LN:431173 skipping SAM header line: @SQ SN:690 LN:463616 skipping SAM header line: @SQ SN:691 LN:420764 skipping SAM header line: @SQ SN:692 LN:434721 skipping SAM header line: @SQ SN:693 LN:412504 skipping SAM header line: @SQ SN:694 LN:429344 skipping SAM header line: @SQ SN:695 LN:404055 skipping SAM header line: @SQ SN:696 LN:234456 skipping SAM header line: @SQ SN:697 LN:289569 skipping SAM header line: @SQ SN:698 LN:426645 skipping SAM header line: @SQ SN:699 LN:427205 skipping SAM header line: @SQ SN:700 LN:435412 skipping SAM header line: @SQ SN:701 LN:425139 skipping SAM header line: @SQ SN:702 LN:422562 skipping SAM header line: @SQ SN:703 LN:424435 skipping SAM header line: @SQ SN:704 LN:424247 skipping SAM header line: @SQ SN:705 LN:423916 skipping SAM header line: @SQ SN:706 LN:378426 skipping SAM header line: @SQ SN:707 LN:422545 skipping SAM header line: @SQ SN:708 LN:405782 skipping SAM header line: @SQ SN:709 LN:421031 skipping SAM header line: @SQ SN:710 LN:435710 skipping SAM header line: @SQ SN:711 LN:420506 skipping SAM header line: @SQ SN:712 LN:402597 skipping SAM header line: @SQ SN:713 LN:416603 skipping SAM header line: @SQ SN:714 LN:429444 skipping SAM header line: @SQ SN:715 LN:432166 skipping SAM header line: @SQ SN:716 LN:235192 skipping SAM header line: @SQ SN:717 LN:400324 skipping SAM header line: @SQ SN:718 LN:415365 skipping SAM header line: @SQ SN:719 LN:418292 skipping SAM header line: @SQ SN:720 LN:414387 skipping SAM header line: @SQ SN:721 LN:79852 skipping SAM header line: @SQ SN:722 LN:414968 skipping SAM header line: @SQ SN:723 LN:413712 skipping SAM header line: @SQ SN:724 LN:48430 skipping SAM header line: @SQ SN:725 LN:430069 skipping SAM header line: @SQ SN:726 LN:430606 skipping SAM header line: @SQ SN:727 LN:406873 skipping SAM header line: @SQ SN:728 LN:284858 skipping SAM header line: @SQ SN:729 LN:419837 skipping SAM header line: @SQ SN:730 LN:397986 skipping SAM header line: @SQ SN:731 LN:401458 skipping SAM header line: @SQ SN:732 LN:394891 skipping SAM header line: @SQ SN:733 LN:412565 skipping SAM header line: @SQ SN:734 LN:409607 skipping SAM header line: @SQ SN:735 LN:409953 skipping SAM header line: @SQ SN:736 LN:407838 skipping SAM header line: @SQ SN:737 LN:415301 skipping SAM header line: @SQ SN:738 LN:406847 skipping SAM header line: @SQ SN:739 LN:411697 skipping SAM header line: @SQ SN:740 LN:398437 skipping SAM header line: @SQ SN:741 LN:405831 skipping SAM header line: @SQ SN:742 LN:99037 skipping SAM header line: @SQ SN:743 LN:389039 skipping SAM header line: @SQ SN:744 LN:398687 skipping SAM header line: @SQ SN:745 LN:130670 skipping SAM header line: @SQ SN:746 LN:444002 skipping SAM header line: @SQ SN:747 LN:402043 skipping SAM header line: @SQ SN:748 LN:383610 skipping SAM header line: @SQ SN:749 LN:390984 skipping SAM header line: @SQ SN:750 LN:436599 skipping SAM header line: @SQ SN:751 LN:417599 skipping SAM header line: @SQ SN:752 LN:385831 skipping SAM header line: @SQ SN:753 LN:395460 skipping SAM header line: @SQ SN:754 LN:395762 skipping SAM header line: @SQ SN:755 LN:397251 skipping SAM header line: @SQ SN:756 LN:397436 skipping SAM header line: @SQ SN:757 LN:392298 skipping SAM header line: @SQ SN:758 LN:395736 skipping SAM header line: @SQ SN:759 LN:387508 skipping SAM header line: @SQ SN:760 LN:398065 skipping SAM header line: @SQ SN:761 LN:344936 skipping SAM header line: @SQ SN:762 LN:393232 skipping SAM header line: @SQ SN:763 LN:381506 skipping SAM header line: @SQ SN:764 LN:392087 skipping SAM header line: @SQ SN:765 LN:316368 skipping SAM header line: @SQ SN:766 LN:394948 skipping SAM header line: @SQ SN:767 LN:383267 skipping SAM header line: @SQ SN:768 LN:46266 skipping SAM header line: @SQ SN:769 LN:387910 skipping SAM header line: @SQ SN:770 LN:400889 skipping SAM header line: @SQ SN:771 LN:547451 skipping SAM header line: @SQ SN:772 LN:371662 skipping SAM header line: @SQ SN:773 LN:386775 skipping SAM header line: @SQ SN:774 LN:391584 skipping SAM header line: @SQ SN:775 LN:384950 skipping SAM header line: @SQ SN:776 LN:396881 skipping SAM header line: @SQ SN:777 LN:366614 skipping SAM header line: @SQ SN:778 LN:397433 skipping SAM header line: @SQ SN:779 LN:396173 skipping SAM header line: @SQ SN:780 LN:381046 skipping SAM header line: @SQ SN:781 LN:388134 skipping SAM header line: @SQ SN:782 LN:380597 skipping SAM header line: @SQ SN:783 LN:381881 skipping SAM header line: @SQ SN:784 LN:373782 skipping SAM header line: @SQ SN:785 LN:411776 skipping SAM header line: @SQ SN:786 LN:386877 skipping SAM header line: @SQ SN:787 LN:384798 skipping SAM header line: @SQ SN:788 LN:383900 skipping SAM header line: @SQ SN:789 LN:371178 skipping SAM header line: @SQ SN:790 LN:72726 skipping SAM header line: @SQ SN:791 LN:382892 skipping SAM header line: @SQ SN:792 LN:396886 skipping SAM header line: @SQ SN:793 LN:381384 skipping SAM header line: @SQ SN:794 LN:392348 skipping SAM header line: @SQ SN:795 LN:375776 skipping SAM header line: @SQ SN:796 LN:372990 skipping SAM header line: @SQ SN:797 LN:298488 skipping SAM header line: @SQ SN:798 LN:370460 skipping SAM header line: @SQ SN:799 LN:379978 skipping SAM header line: @SQ SN:800 LN:381596 skipping SAM header line: @SQ SN:801 LN:379742 skipping SAM header line: @SQ SN:802 LN:394013 skipping SAM header line: @SQ SN:803 LN:379113 skipping SAM header line: @SQ SN:804 LN:379013 skipping SAM header line: @SQ SN:805 LN:360050 skipping SAM header line: @SQ SN:806 LN:386700 skipping SAM header line: @SQ SN:807 LN:378051 skipping SAM header line: @SQ SN:808 LN:377770 skipping SAM header line: @SQ SN:809 LN:368183 skipping SAM header line: @SQ SN:810 LN:376624 skipping SAM header line: @SQ SN:811 LN:375857 skipping SAM header line: @SQ SN:812 LN:381882 skipping SAM header line: @SQ SN:813 LN:374696 skipping SAM header line: @SQ SN:814 LN:42156 skipping SAM header line: @SQ SN:815 LN:372968 skipping SAM header line: @SQ SN:816 LN:373635 skipping SAM header line: @SQ SN:817 LN:373320 skipping SAM header line: @SQ SN:818 LN:366336 skipping SAM header line: @SQ SN:819 LN:352869 skipping SAM header line: @SQ SN:820 LN:40412 skipping SAM header line: @SQ SN:821 LN:371267 skipping SAM header line: @SQ SN:822 LN:369663 skipping SAM header line: @SQ SN:823 LN:369681 skipping SAM header line: @SQ SN:824 LN:353668 skipping SAM header line: @SQ SN:825 LN:369950 skipping SAM header line: @SQ SN:826 LN:368782 skipping SAM header line: @SQ SN:827 LN:304921 skipping SAM header line: @SQ SN:828 LN:370762 skipping SAM header line: @SQ SN:829 LN:371122 skipping SAM header line: @SQ SN:830 LN:366251 skipping SAM header line: @SQ SN:831 LN:371714 skipping SAM header line: @SQ SN:832 LN:359102 skipping SAM header line: @SQ SN:833 LN:365317 skipping SAM header line: @SQ SN:834 LN:367204 skipping SAM header line: @SQ SN:835 LN:365964 skipping SAM header line: @SQ SN:836 LN:364988 skipping SAM header line: @SQ SN:837 LN:361366 skipping SAM header line: @SQ SN:838 LN:360139 skipping SAM header line: @SQ SN:839 LN:364473 skipping SAM header line: @SQ SN:840 LN:371420 skipping SAM header line: @SQ SN:841 LN:347574 skipping SAM header line: @SQ SN:842 LN:369654 skipping SAM header line: @SQ SN:843 LN:266194 skipping SAM header line: @SQ SN:844 LN:367180 skipping SAM header line: @SQ SN:845 LN:367810 skipping SAM header line: @SQ SN:846 LN:357723 skipping SAM header line: @SQ SN:847 LN:365180 skipping SAM header line: @SQ SN:848 LN:363582 skipping SAM header line: @SQ SN:849 LN:359726 skipping SAM header line: @SQ SN:850 LN:340455 skipping SAM header line: @SQ SN:851 LN:359384 skipping SAM header line: @SQ SN:852 LN:346847 skipping SAM header line: @SQ SN:853 LN:360137 skipping SAM header line: @SQ SN:854 LN:351529 skipping SAM header line: @SQ SN:855 LN:351165 skipping SAM header line: @SQ SN:856 LN:359992 skipping SAM header line: @SQ SN:857 LN:50536 skipping SAM header line: @SQ SN:858 LN:353816 skipping SAM header line: @SQ SN:859 LN:323622 skipping SAM header line: @SQ SN:860 LN:351148 skipping SAM header line: @SQ SN:861 LN:353826 skipping SAM header line: @SQ SN:862 LN:353823 skipping SAM header line: @SQ SN:863 LN:359048 skipping SAM header line: @SQ SN:864 LN:349439 skipping SAM header line: @SQ SN:865 LN:353667 skipping SAM header line: @SQ SN:866 LN:200483 skipping SAM header line: @SQ SN:867 LN:353045 skipping SAM header line: @SQ SN:868 LN:351198 skipping SAM header line: @SQ SN:869 LN:367555 skipping SAM header line: @SQ SN:870 LN:364726 skipping SAM header line: @SQ SN:871 LN:342655 skipping SAM header line: @SQ SN:872 LN:336991 skipping SAM header line: @SQ SN:873 LN:344588 skipping SAM header line: @SQ SN:874 LN:349750 skipping SAM header line: @SQ SN:875 LN:350262 skipping SAM header line: @SQ SN:876 LN:362711 skipping SAM header line: @SQ SN:877 LN:356104 skipping SAM header line: @SQ SN:878 LN:349885 skipping SAM header line: @SQ SN:879 LN:332424 skipping SAM header line: @SQ SN:880 LN:348545 skipping SAM header line: @SQ SN:881 LN:346872 skipping SAM header line: @SQ SN:882 LN:348631 skipping SAM header line: @SQ SN:883 LN:347554 skipping SAM header line: @SQ SN:884 LN:347194 skipping SAM header line: @SQ SN:885 LN:347300 skipping SAM header line: @SQ SN:886 LN:346765 skipping SAM header line: @SQ SN:887 LN:346457 skipping SAM header line: @SQ SN:888 LN:338405 skipping SAM header line: @SQ SN:889 LN:347374 skipping SAM header line: @SQ SN:890 LN:351688 skipping SAM header line: @SQ SN:891 LN:345243 skipping SAM header line: @SQ SN:892 LN:354364 skipping SAM header line: @SQ SN:893 LN:24229 skipping SAM header line: @SQ SN:894 LN:343006 skipping SAM header line: @SQ SN:895 LN:340302 skipping SAM header line: @SQ SN:896 LN:345059 skipping SAM header line: @SQ SN:897 LN:342604 skipping SAM header line: @SQ SN:898 LN:97592 skipping SAM header line: @SQ SN:899 LN:345128 skipping SAM header line: @SQ SN:900 LN:354769 skipping SAM header line: @SQ SN:901 LN:342845 skipping SAM header line: @SQ SN:902 LN:343617 skipping SAM header line: @SQ SN:903 LN:356715 skipping SAM header line: @SQ SN:904 LN:355647 skipping SAM header line: @SQ SN:905 LN:338320 skipping SAM header line: @SQ SN:906 LN:361461 skipping SAM header line: @SQ SN:907 LN:337907 skipping SAM header line: @SQ SN:908 LN:318845 skipping SAM header line: @SQ SN:909 LN:333605 skipping SAM header line: @SQ SN:910 LN:336824 skipping SAM header line: @SQ SN:911 LN:320980 skipping SAM header line: @SQ SN:912 LN:336623 skipping SAM header line: @SQ SN:913 LN:330262 skipping SAM header line: @SQ SN:914 LN:336236 skipping SAM header line: @SQ SN:915 LN:338136 skipping SAM header line: @SQ SN:916 LN:325799 skipping SAM header line: @SQ SN:917 LN:333906 skipping SAM header line: @SQ SN:918 LN:353482 skipping SAM header line: @SQ SN:919 LN:334070 skipping SAM header line: @SQ SN:920 LN:37809 skipping SAM header line: @SQ SN:921 LN:333296 skipping SAM header line: 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@SQ SN:1943 LN:109977 skipping SAM header line: @SQ SN:1944 LN:109924 skipping SAM header line: @SQ SN:1945 LN:109451 skipping SAM header line: @SQ SN:1946 LN:109411 skipping SAM header line: @SQ SN:1947 LN:109439 skipping SAM header line: @SQ SN:1948 LN:109393 skipping SAM header line: @SQ SN:1949 LN:109381 skipping SAM header line: @SQ SN:1950 LN:107434 skipping SAM header line: @SQ SN:1951 LN:109332 skipping SAM header line: @SQ SN:1952 LN:109046 skipping SAM header line: @SQ SN:1953 LN:105147 skipping SAM header line: @SQ SN:1954 LN:108585 skipping SAM header line: @SQ SN:1955 LN:108589 skipping SAM header line: @SQ SN:1956 LN:108237 skipping SAM header line: @SQ SN:1957 LN:108255 skipping SAM header line: @SQ SN:1958 LN:94221 skipping SAM header line: @SQ SN:1959 LN:107760 skipping SAM header line: @SQ SN:1960 LN:107770 skipping SAM header line: @SQ SN:1961 LN:72473 skipping SAM header line: @SQ SN:1962 LN:107737 skipping SAM header line: @SQ SN:1963 LN:107637 skipping SAM header line: @SQ SN:1964 LN:107514 skipping SAM header line: @SQ SN:1965 LN:107577 skipping SAM header line: @SQ SN:1966 LN:107343 skipping SAM header line: @SQ SN:1967 LN:107240 skipping SAM header line: @SQ SN:1968 LN:107171 skipping SAM header line: @SQ SN:1969 LN:107244 skipping SAM header line: @SQ SN:1970 LN:107025 skipping SAM header line: @SQ SN:1971 LN:107064 skipping SAM header line: @SQ SN:1972 LN:106908 skipping SAM header line: @SQ SN:1973 LN:107069 skipping SAM header line: @SQ SN:1974 LN:106277 skipping SAM header line: @SQ SN:1975 LN:106494 skipping SAM header line: @SQ SN:1976 LN:106415 skipping SAM header line: @SQ SN:1977 LN:106283 skipping SAM header line: @SQ SN:1978 LN:106270 skipping SAM header line: @SQ SN:1979 LN:91432 skipping SAM header line: @SQ SN:1980 LN:106609 skipping SAM header line: @SQ SN:1981 LN:105719 skipping SAM header line: @SQ SN:1982 LN:105734 skipping SAM header line: @SQ SN:1983 LN:105473 skipping SAM header line: @SQ SN:1984 LN:105265 skipping SAM header line: @SQ SN:1985 LN:105061 skipping SAM header line: @SQ SN:1986 LN:93989 skipping SAM header line: @SQ SN:1987 LN:105092 skipping SAM header line: @SQ SN:1988 LN:104670 skipping SAM header line: @SQ SN:1989 LN:104946 skipping SAM header line: @SQ SN:1990 LN:104135 skipping SAM header line: @SQ SN:1991 LN:104795 skipping SAM header line: @SQ SN:1992 LN:104687 skipping SAM header line: @SQ SN:1993 LN:104621 skipping SAM header line: @SQ SN:1994 LN:104293 skipping SAM header line: @SQ SN:1995 LN:104179 skipping SAM header line: @SQ SN:1996 LN:103959 skipping SAM header line: @SQ SN:1997 LN:103949 skipping SAM header line: @SQ SN:1998 LN:103864 skipping SAM header line: @SQ SN:1999 LN:103963 skipping SAM header line: @SQ SN:2000 LN:103460 skipping SAM header line: @SQ SN:2001 LN:103991 skipping SAM header line: @SQ SN:2002 LN:103581 skipping SAM header line: @SQ SN:2003 LN:103339 skipping SAM header line: @SQ SN:2004 LN:103130 skipping SAM header line: @SQ SN:2005 LN:102933 skipping SAM header line: @SQ SN:2006 LN:102795 skipping SAM header line: @SQ SN:2007 LN:102505 skipping SAM header line: @SQ SN:2008 LN:102228 skipping SAM header line: @SQ SN:2009 LN:101431 skipping SAM header line: @SQ SN:2010 LN:102124 skipping SAM header line: @SQ SN:2011 LN:101981 skipping SAM header line: @SQ SN:2012 LN:101749 skipping SAM header line: @SQ SN:2013 LN:101706 skipping SAM header line: @SQ SN:2014 LN:101561 skipping SAM header line: @SQ SN:2015 LN:101342 skipping SAM header line: @SQ SN:2016 LN:101336 skipping SAM header line: @SQ SN:2017 LN:101173 skipping SAM header line: @SQ SN:2018 LN:101223 skipping SAM header line: @SQ SN:2019 LN:100684 skipping SAM header line: @SQ SN:2020 LN:91334 skipping SAM header line: @SQ SN:2021 LN:100682 skipping SAM header line: @SQ SN:2022 LN:100541 skipping SAM header line: @SQ SN:2023 LN:100636 skipping SAM header line: @SQ SN:2024 LN:100324 skipping SAM header line: @SQ SN:2025 LN:100075 skipping SAM header line: @SQ SN:2026 LN:100242 skipping SAM header line: @SQ SN:2027 LN:100180 skipping SAM header line: @SQ SN:2028 LN:100026 skipping SAM header line: @SQ SN:2029 LN:100109 skipping SAM header line: @SQ SN:2030 LN:93285 skipping SAM header line: @SQ SN:2031 LN:100030 skipping SAM header line: @SQ SN:2032 LN:99985 skipping SAM header line: @SQ SN:2033 LN:99934 skipping SAM header line: @SQ SN:2034 LN:99637 skipping SAM header line: @SQ SN:2035 LN:99549 skipping SAM header line: @SQ SN:2036 LN:99308 skipping SAM header line: @SQ SN:2037 LN:97173 skipping SAM header line: @SQ SN:2038 LN:99173 skipping SAM header line: @SQ SN:2039 LN:98956 skipping SAM header line: @SQ SN:2040 LN:99014 skipping SAM header line: @SQ SN:2041 LN:95813 skipping SAM header line: @SQ SN:2042 LN:98910 skipping SAM header line: @SQ SN:2043 LN:98588 skipping SAM header line: @SQ SN:2044 LN:98491 skipping SAM header line: @SQ SN:2045 LN:107309 skipping SAM header line: @SQ SN:2046 LN:98396 skipping SAM header line: @SQ SN:2047 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skipping SAM header line: @SQ SN:2069 LN:96135 skipping SAM header line: @SQ SN:2070 LN:95755 skipping SAM header line: @SQ SN:2071 LN:95759 skipping SAM header line: @SQ SN:2072 LN:95914 skipping SAM header line: @SQ SN:2073 LN:95598 skipping SAM header line: @SQ SN:2074 LN:95632 skipping SAM header line: @SQ SN:2075 LN:95426 skipping SAM header line: @SQ SN:2076 LN:95409 skipping SAM header line: @SQ SN:2077 LN:95137 skipping SAM header line: @SQ SN:2078 LN:95069 skipping SAM header line: @SQ SN:2079 LN:95225 skipping SAM header line: @SQ SN:2080 LN:94977 skipping SAM header line: @SQ SN:2081 LN:94912 skipping SAM header line: @SQ SN:2082 LN:94259 skipping SAM header line: @SQ SN:2083 LN:94263 skipping SAM header line: @SQ SN:2084 LN:94015 skipping SAM header line: @SQ SN:2085 LN:94150 skipping SAM header line: @SQ SN:2086 LN:93951 skipping SAM header line: @SQ SN:2087 LN:93634 skipping SAM header line: @SQ SN:2088 LN:93538 skipping SAM header line: @SQ SN:2089 LN:92984 skipping SAM header line: @SQ SN:2090 LN:93081 skipping SAM header line: @SQ SN:2091 LN:92767 skipping SAM header line: @SQ SN:2092 LN:92989 skipping SAM header line: @SQ SN:2093 LN:92684 skipping SAM header line: @SQ SN:2094 LN:95525 skipping SAM header line: @SQ SN:2095 LN:88045 skipping SAM header line: @SQ SN:2096 LN:92421 skipping SAM header line: @SQ SN:2097 LN:92082 skipping SAM header line: @SQ SN:2098 LN:92151 skipping SAM header line: @SQ SN:2099 LN:92022 skipping SAM header line: @SQ SN:2100 LN:88798 skipping SAM header line: @SQ SN:2101 LN:91659 skipping SAM header line: @SQ SN:2102 LN:92014 skipping SAM header line: @SQ SN:2103 LN:92892 skipping SAM header line: @SQ SN:2104 LN:91625 skipping SAM header line: @SQ SN:2105 LN:93454 skipping SAM header line: @SQ SN:2106 LN:91282 skipping SAM header line: @SQ SN:2107 LN:91370 skipping SAM header line: @SQ SN:2108 LN:91391 skipping SAM header line: @SQ SN:2109 LN:86994 skipping SAM header line: @SQ SN:2110 LN:91282 skipping SAM header line: 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skipping SAM header line: @SQ SN:2154 LN:87858 skipping SAM header line: @SQ SN:2155 LN:87764 skipping SAM header line: @SQ SN:2156 LN:87457 skipping SAM header line: @SQ SN:2157 LN:87528 skipping SAM header line: @SQ SN:2158 LN:87530 skipping SAM header line: @SQ SN:2159 LN:87464 skipping SAM header line: @SQ SN:2160 LN:87454 skipping SAM header line: @SQ SN:2161 LN:87500 skipping SAM header line: @SQ SN:2162 LN:87455 skipping SAM header line: @SQ SN:2163 LN:87678 skipping SAM header line: @SQ SN:2164 LN:87258 skipping SAM header line: @SQ SN:2165 LN:91187 skipping SAM header line: @SQ SN:2166 LN:87132 skipping SAM header line: @SQ SN:2167 LN:87095 skipping SAM header line: @SQ SN:2168 LN:87130 skipping SAM header line: @SQ SN:2169 LN:87013 skipping SAM header line: @SQ SN:2170 LN:86896 skipping SAM header line: @SQ SN:2171 LN:86968 skipping SAM header line: @SQ SN:2172 LN:86879 skipping SAM header line: @SQ SN:2173 LN:86747 skipping SAM header line: @SQ SN:2174 LN:86692 skipping SAM header line: @SQ SN:2175 LN:86607 skipping SAM header line: @SQ SN:2176 LN:86221 skipping SAM header line: @SQ SN:2177 LN:86192 skipping SAM header line: @SQ SN:2178 LN:82929 skipping SAM header line: @SQ SN:2179 LN:85713 skipping SAM header line: @SQ SN:2180 LN:85855 skipping SAM header line: @SQ SN:2181 LN:85675 skipping SAM header line: @SQ SN:2182 LN:85616 skipping SAM header line: @SQ SN:2183 LN:85752 skipping SAM header line: @SQ SN:2184 LN:85347 skipping SAM header line: @SQ SN:2185 LN:85476 skipping SAM header line: @SQ SN:2186 LN:85443 skipping SAM header line: @SQ SN:2187 LN:85141 skipping SAM header line: @SQ SN:2188 LN:85076 skipping SAM header line: @SQ SN:2189 LN:85073 skipping SAM header line: @SQ SN:2190 LN:35189 skipping SAM header line: @SQ SN:2191 LN:84963 skipping SAM header line: @SQ SN:2192 LN:84909 skipping SAM header line: @SQ SN:2193 LN:84824 skipping SAM header line: @SQ SN:2194 LN:84892 skipping SAM header line: @SQ SN:2195 LN:84561 skipping SAM header line: @SQ SN:2196 LN:84403 skipping SAM header line: @SQ SN:2197 LN:85441 skipping SAM header line: @SQ SN:2198 LN:84247 skipping SAM header line: @SQ SN:2199 LN:84129 skipping SAM header line: @SQ SN:2200 LN:84122 skipping SAM header line: @SQ SN:2201 LN:84108 skipping SAM header line: @SQ SN:2202 LN:78294 skipping SAM header line: @SQ SN:2203 LN:84055 skipping SAM header line: @SQ SN:2204 LN:83935 skipping SAM header line: @SQ SN:2205 LN:83947 skipping SAM header line: @SQ SN:2206 LN:83783 skipping SAM header line: @SQ SN:2207 LN:83773 skipping SAM header line: @SQ SN:2208 LN:83642 skipping SAM header line: @SQ SN:2209 LN:83560 skipping SAM header line: @SQ SN:2210 LN:83622 skipping SAM header line: @SQ SN:2211 LN:83511 skipping SAM header line: @SQ SN:2212 LN:77866 skipping SAM header line: @SQ SN:2213 LN:83626 skipping SAM header line: @SQ SN:2214 LN:83274 skipping SAM header line: @SQ SN:2215 LN:83145 skipping SAM header line: @SQ SN:2216 LN:83223 skipping SAM header line: @SQ SN:2217 LN:83075 skipping SAM header line: @SQ SN:2218 LN:79562 skipping SAM header line: @SQ SN:2219 LN:83033 skipping SAM header line: @SQ SN:2220 LN:82365 skipping SAM header line: @SQ SN:2221 LN:82837 skipping SAM header line: @SQ SN:2222 LN:82268 skipping SAM header line: @SQ SN:2223 LN:79365 skipping SAM header line: @SQ SN:2224 LN:82611 skipping SAM header line: @SQ SN:2225 LN:82322 skipping SAM header line: @SQ SN:2226 LN:82523 skipping SAM header line: @SQ SN:2227 LN:82242 skipping SAM header line: @SQ SN:2228 LN:82163 skipping SAM header line: @SQ SN:2229 LN:81935 skipping SAM header line: @SQ SN:2230 LN:81937 skipping SAM header line: @SQ SN:2231 LN:81759 skipping SAM header line: @SQ SN:2232 LN:81618 skipping SAM header line: @SQ SN:2233 LN:81627 skipping SAM header line: @SQ SN:2234 LN:36469 skipping SAM header line: @SQ SN:2235 LN:81411 skipping SAM header line: @SQ SN:2236 LN:76984 skipping SAM header line: @SQ SN:2237 LN:81408 skipping SAM header line: @SQ SN:2238 LN:76900 skipping SAM header line: @SQ SN:2239 LN:81219 skipping SAM header line: @SQ SN:2240 LN:81258 skipping SAM header line: @SQ SN:2241 LN:74330 skipping SAM header line: @SQ SN:2242 LN:80830 skipping SAM header line: @SQ SN:2243 LN:80919 skipping SAM header line: @SQ SN:2244 LN:44470 skipping SAM header line: @SQ SN:2245 LN:80745 skipping SAM header line: @SQ SN:2246 LN:80652 skipping SAM header line: @SQ SN:2247 LN:80500 skipping SAM header line: @SQ SN:2248 LN:80410 skipping SAM header line: @SQ SN:2249 LN:80508 skipping SAM header line: @SQ SN:2250 LN:80397 skipping SAM header line: @SQ SN:2251 LN:78056 skipping SAM header line: @SQ SN:2252 LN:80086 skipping SAM header line: @SQ SN:2253 LN:80020 skipping SAM header line: @SQ SN:2254 LN:79993 skipping SAM header line: @SQ SN:2255 LN:79838 skipping SAM header line: @SQ SN:2256 LN:70719 skipping SAM header line: @SQ SN:2257 LN:79683 skipping SAM header line: @SQ SN:2258 LN:79483 skipping SAM header line: @SQ SN:2259 LN:79546 skipping SAM header line: @SQ SN:2260 LN:79542 skipping SAM header line: @SQ SN:2261 LN:79517 skipping SAM header line: @SQ SN:2262 LN:79196 skipping SAM header line: @SQ SN:2263 LN:79603 skipping SAM header line: @SQ SN:2264 LN:78626 skipping SAM header line: @SQ SN:2265 LN:78697 skipping SAM header line: @SQ SN:2266 LN:78717 skipping SAM header line: @SQ SN:2267 LN:78746 skipping SAM header line: @SQ SN:2268 LN:78512 skipping SAM header line: @SQ SN:2269 LN:78645 skipping SAM header line: @SQ SN:2270 LN:78270 skipping SAM header line: @SQ SN:2271 LN:78468 skipping SAM header line: @SQ SN:2272 LN:78328 skipping SAM header line: @SQ SN:2273 LN:79407 skipping SAM header line: @SQ SN:2274 LN:78188 skipping SAM header line: @SQ SN:2275 LN:71721 skipping SAM header line: @SQ SN:2276 LN:78041 skipping SAM header line: @SQ SN:2277 LN:78022 skipping SAM header line: @SQ SN:2278 LN:77591 skipping SAM header line: @SQ SN:2279 LN:77810 skipping SAM header line: @SQ SN:2280 LN:77669 skipping SAM header line: 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LN:75756 skipping SAM header line: @SQ SN:2303 LN:75162 skipping SAM header line: @SQ SN:2304 LN:75341 skipping SAM header line: @SQ SN:2305 LN:74943 skipping SAM header line: @SQ SN:2306 LN:75204 skipping SAM header line: @SQ SN:2307 LN:75142 skipping SAM header line: @SQ SN:2308 LN:75098 skipping SAM header line: @SQ SN:2309 LN:74323 skipping SAM header line: @SQ SN:2310 LN:74982 skipping SAM header line: @SQ SN:2311 LN:74353 skipping SAM header line: @SQ SN:2312 LN:74691 skipping SAM header line: @SQ SN:2313 LN:74675 skipping SAM header line: @SQ SN:2314 LN:74492 skipping SAM header line: @SQ SN:2315 LN:50290 skipping SAM header line: @SQ SN:2316 LN:74011 skipping SAM header line: @SQ SN:2317 LN:73882 skipping SAM header line: @SQ SN:2318 LN:75193 skipping SAM header line: @SQ SN:2319 LN:73805 skipping SAM header line: @SQ SN:2320 LN:73769 skipping SAM header line: @SQ SN:2321 LN:73753 skipping SAM header line: @SQ SN:2322 LN:73662 skipping SAM header line: @SQ SN:2323 LN:74196 skipping SAM header line: @SQ SN:2324 LN:73551 skipping SAM header line: @SQ SN:2325 LN:73591 skipping SAM header line: @SQ SN:2326 LN:73488 skipping SAM header line: @SQ SN:2327 LN:73490 skipping SAM header line: @SQ SN:2328 LN:73369 skipping SAM header line: @SQ SN:2329 LN:73213 skipping SAM header line: @SQ SN:2330 LN:73239 skipping SAM header line: @SQ SN:2331 LN:73044 skipping SAM header line: @SQ SN:2332 LN:72888 skipping SAM header line: @SQ SN:2333 LN:72835 skipping SAM header line: @SQ SN:2334 LN:73814 skipping SAM header line: @SQ SN:2335 LN:72803 skipping SAM header line: @SQ SN:2336 LN:72735 skipping SAM header line: @SQ SN:2337 LN:72548 skipping SAM header line: @SQ SN:2338 LN:72609 skipping SAM header line: @SQ SN:2339 LN:72639 skipping SAM header line: @SQ SN:2340 LN:72328 skipping SAM header line: @SQ SN:2341 LN:72089 skipping SAM header line: @SQ SN:2342 LN:72451 skipping SAM header line: @SQ SN:2343 LN:72309 skipping SAM header line: @SQ SN:2344 LN:72163 skipping SAM header line: @SQ SN:2345 LN:72087 skipping SAM header line: @SQ SN:2346 LN:71982 skipping SAM header line: @SQ SN:2347 LN:63031 skipping SAM header line: @SQ SN:2348 LN:71841 skipping SAM header line: @SQ SN:2349 LN:71745 skipping SAM header line: @SQ SN:2350 LN:71566 skipping SAM header line: @SQ SN:2351 LN:71677 skipping SAM header line: @SQ SN:2352 LN:71514 skipping SAM header line: @SQ SN:2353 LN:71418 skipping SAM header line: @SQ SN:2354 LN:71192 skipping SAM header line: @SQ SN:2355 LN:51418 skipping SAM header line: @SQ SN:2356 LN:71201 skipping SAM header line: @SQ SN:2357 LN:71145 skipping SAM header line: @SQ SN:2358 LN:70977 skipping SAM header line: @SQ SN:2359 LN:70908 skipping SAM header line: @SQ SN:2360 LN:70900 skipping SAM header line: @SQ SN:2361 LN:70675 skipping SAM header line: @SQ SN:2362 LN:70782 skipping SAM header line: @SQ SN:2363 LN:70767 skipping SAM header line: @SQ SN:2364 LN:73923 skipping SAM header line: @SQ SN:2365 LN:70381 skipping SAM header line: @SQ SN:2366 LN:70331 skipping SAM header line: @SQ SN:2367 LN:70113 skipping SAM header line: @SQ SN:2368 LN:70190 skipping SAM header line: @SQ SN:2369 LN:60170 skipping SAM header line: @SQ SN:2370 LN:69961 skipping SAM header line: @SQ SN:2371 LN:69943 skipping SAM header line: @SQ SN:2372 LN:69904 skipping SAM header line: @SQ SN:2373 LN:72714 skipping SAM header line: @SQ SN:2374 LN:51000 skipping SAM header line: @SQ SN:2375 LN:69928 skipping SAM header line: @SQ SN:2376 LN:69875 skipping SAM header line: @SQ SN:2377 LN:69864 skipping SAM header line: @SQ SN:2378 LN:69279 skipping SAM header line: @SQ SN:2379 LN:74065 skipping SAM header line: @SQ SN:2380 LN:69016 skipping SAM header line: @SQ SN:2381 LN:69052 skipping SAM header line: @SQ SN:2382 LN:68824 skipping SAM header line: @SQ SN:2383 LN:68944 skipping SAM header line: @SQ SN:2384 LN:68807 skipping SAM header line: @SQ SN:2385 LN:68778 skipping SAM header line: @SQ SN:2386 LN:68715 skipping SAM header line: @SQ SN:2387 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skipping SAM header line: @SQ SN:2409 LN:66509 skipping SAM header line: @SQ SN:2410 LN:66625 skipping SAM header line: @SQ SN:2411 LN:66645 skipping SAM header line: @SQ SN:2412 LN:62202 skipping SAM header line: @SQ SN:2413 LN:66442 skipping SAM header line: @SQ SN:2414 LN:65054 skipping SAM header line: @SQ SN:2415 LN:66437 skipping SAM header line: @SQ SN:2416 LN:66333 skipping SAM header line: @SQ SN:2417 LN:66134 skipping SAM header line: @SQ SN:2418 LN:46032 skipping SAM header line: @SQ SN:2419 LN:60888 skipping SAM header line: @SQ SN:2420 LN:67039 skipping SAM header line: @SQ SN:2421 LN:65507 skipping SAM header line: @SQ SN:2422 LN:65609 skipping SAM header line: @SQ SN:2423 LN:65455 skipping SAM header line: @SQ SN:2424 LN:63410 skipping SAM header line: @SQ SN:2425 LN:65452 skipping SAM header line: @SQ SN:2426 LN:65430 skipping SAM header line: @SQ SN:2427 LN:65196 skipping SAM header line: @SQ SN:2428 LN:65134 skipping SAM header line: @SQ SN:2429 LN:72116 skipping SAM header line: @SQ SN:2430 LN:64991 skipping SAM header line: @SQ SN:2431 LN:60442 skipping SAM header line: @SQ SN:2432 LN:65320 skipping SAM header line: @SQ SN:2433 LN:64820 skipping SAM header line: @SQ SN:2434 LN:64741 skipping SAM header line: @SQ SN:2435 LN:64578 skipping SAM header line: @SQ SN:2436 LN:64504 skipping SAM header line: @SQ SN:2437 LN:64524 skipping SAM header line: @SQ SN:2438 LN:35475 skipping SAM header line: @SQ SN:2439 LN:64140 skipping SAM header line: @SQ SN:2440 LN:63948 skipping SAM header line: @SQ SN:2441 LN:63161 skipping SAM header line: @SQ SN:2442 LN:63133 skipping SAM header line: @SQ SN:2443 LN:63012 skipping SAM header line: @SQ SN:2444 LN:62987 skipping SAM header line: @SQ SN:2445 LN:62913 skipping SAM header line: @SQ SN:2446 LN:62886 skipping SAM header line: @SQ SN:2447 LN:62732 skipping SAM header line: @SQ SN:2448 LN:62499 skipping SAM header line: @SQ SN:2449 LN:63847 skipping SAM header line: @SQ SN:2450 LN:63591 skipping SAM header line: @SQ SN:2451 LN:63586 skipping SAM header line: @SQ SN:2452 LN:63404 skipping SAM header line: @SQ SN:2453 LN:60537 skipping SAM header line: @SQ SN:2454 LN:63282 skipping SAM header line: @SQ SN:2455 LN:63224 skipping SAM header line: @SQ SN:2456 LN:63253 skipping SAM header line: @SQ SN:2457 LN:62472 skipping SAM header line: @SQ SN:2458 LN:62579 skipping SAM header line: @SQ SN:2459 LN:62232 skipping SAM header line: @SQ SN:2460 LN:62044 skipping SAM header line: @SQ SN:2461 LN:61835 skipping SAM header line: @SQ SN:2462 LN:62668 skipping SAM header line: @SQ SN:2463 LN:61805 skipping SAM header line: @SQ SN:2464 LN:61797 skipping SAM header line: @SQ SN:2465 LN:61717 skipping SAM header line: @SQ SN:2466 LN:61638 skipping SAM header line: @SQ SN:2467 LN:61777 skipping SAM header line: @SQ SN:2468 LN:61687 skipping SAM header line: @SQ SN:2469 LN:61605 skipping SAM header line: @SQ SN:2470 LN:61590 skipping SAM header line: @SQ SN:2471 LN:28960 skipping SAM header line: @SQ SN:2472 LN:61599 skipping SAM header line: @SQ SN:2473 LN:47108 skipping SAM header line: @SQ SN:2474 LN:61295 skipping SAM header line: @SQ SN:2475 LN:61249 skipping SAM header line: @SQ SN:2476 LN:61193 skipping SAM header line: @SQ SN:2477 LN:61411 skipping SAM header line: @SQ SN:2478 LN:61298 skipping SAM header line: @SQ SN:2479 LN:61848 skipping SAM header line: @SQ SN:2480 LN:61084 skipping SAM header line: @SQ SN:2481 LN:61128 skipping SAM header line: @SQ SN:2482 LN:60706 skipping SAM header line: @SQ SN:2483 LN:59495 skipping SAM header line: @SQ SN:2484 LN:60597 skipping SAM header line: @SQ SN:2485 LN:60583 skipping SAM header line: @SQ SN:2486 LN:60368 skipping SAM header line: @SQ SN:2487 LN:60399 skipping SAM header line: @SQ SN:2488 LN:62056 skipping SAM header line: @SQ SN:2489 LN:56950 skipping SAM header line: @SQ SN:2490 LN:60011 skipping SAM header line: @SQ SN:2491 LN:59962 skipping SAM header line: @SQ SN:2492 LN:59882 skipping SAM header line: @SQ SN:2493 LN:59253 skipping SAM header line: @SQ SN:2494 LN:59252 skipping SAM header line: @SQ SN:2495 LN:59219 skipping SAM header line: @SQ SN:2496 LN:58999 skipping SAM header line: @SQ SN:2497 LN:58997 skipping SAM header line: @SQ SN:2498 LN:58752 skipping SAM header line: @SQ SN:2499 LN:58758 skipping SAM header line: @SQ SN:2500 LN:58628 skipping SAM header line: @SQ SN:2501 LN:58602 skipping SAM header line: @SQ SN:2502 LN:58402 skipping SAM header line: @SQ SN:2503 LN:58186 skipping SAM header line: @SQ SN:2504 LN:58405 skipping SAM header line: @SQ SN:2505 LN:58107 skipping SAM header line: @SQ SN:2506 LN:57879 skipping SAM header line: @SQ SN:2507 LN:40414 skipping SAM header line: @SQ SN:2508 LN:57893 skipping SAM header line: @SQ SN:2509 LN:43660 skipping SAM header line: @SQ SN:2510 LN:55003 skipping SAM header line: @SQ SN:2511 LN:57791 skipping SAM header line: @SQ SN:2512 LN:57696 skipping SAM header line: @SQ SN:2513 LN:57587 skipping SAM header line: @SQ SN:2514 LN:57337 skipping SAM header line: @SQ SN:2515 LN:57213 skipping SAM header line: @SQ SN:2516 LN:57247 skipping SAM header line: @SQ SN:2517 LN:57178 skipping SAM header line: @SQ SN:2518 LN:57145 skipping SAM header line: @SQ SN:2519 LN:57168 skipping SAM header line: @SQ SN:2520 LN:57157 skipping SAM header line: @SQ SN:2521 LN:56997 skipping SAM header line: @SQ SN:2522 LN:56822 skipping SAM header line: @SQ SN:2523 LN:56732 skipping SAM header line: @SQ SN:2524 LN:56698 skipping SAM header line: @SQ SN:2525 LN:56638 skipping SAM header line: @SQ SN:2526 LN:56527 skipping SAM header line: @SQ SN:2527 LN:56505 skipping SAM header line: @SQ SN:2528 LN:56456 skipping SAM header line: @SQ SN:2529 LN:56347 skipping SAM header line: @SQ SN:2530 LN:56324 skipping SAM header line: @SQ SN:2531 LN:56231 skipping SAM header line: @SQ SN:2532 LN:56002 skipping SAM header line: @SQ SN:2533 LN:56066 skipping SAM header line: @SQ SN:2534 LN:56317 skipping SAM header line: @SQ SN:2535 LN:55885 skipping SAM header line: @SQ SN:2536 LN:45049 skipping SAM header line: @SQ SN:2537 LN:55791 skipping SAM header line: @SQ SN:2538 LN:56237 skipping SAM header line: @SQ SN:2539 LN:55598 skipping SAM header line: @SQ SN:2540 LN:55559 skipping SAM header line: @SQ SN:2541 LN:55525 skipping SAM header line: @SQ SN:2542 LN:52189 skipping SAM header line: @SQ SN:2543 LN:55486 skipping SAM header line: @SQ SN:2544 LN:55312 skipping SAM header line: @SQ SN:2545 LN:55384 skipping SAM header line: @SQ SN:2546 LN:55349 skipping SAM header line: @SQ SN:2547 LN:55186 skipping SAM header line: @SQ SN:2548 LN:55163 skipping SAM header line: @SQ SN:2549 LN:55129 skipping SAM header line: @SQ SN:2550 LN:55032 skipping SAM header line: @SQ SN:2551 LN:55074 skipping SAM header line: @SQ SN:2552 LN:55076 skipping SAM header line: @SQ SN:2553 LN:55091 skipping SAM header line: @SQ SN:2554 LN:54753 skipping SAM header line: @SQ SN:2555 LN:54671 skipping SAM header line: @SQ SN:2556 LN:54564 skipping SAM header line: @SQ SN:2557 LN:54475 skipping SAM header line: @SQ SN:2558 LN:54482 skipping SAM header line: @SQ SN:2559 LN:54554 skipping SAM header line: @SQ SN:2560 LN:54487 skipping SAM header line: @SQ SN:2561 LN:54494 skipping SAM header line: @SQ SN:2562 LN:54177 skipping SAM header line: @SQ SN:2563 LN:53804 skipping SAM header line: @SQ SN:2564 LN:53713 skipping SAM header line: @SQ SN:2565 LN:53419 skipping SAM header line: @SQ SN:2566 LN:53361 skipping SAM header line: @SQ SN:2567 LN:53262 skipping SAM header line: @SQ SN:2568 LN:53091 skipping SAM header line: @SQ SN:2569 LN:53047 skipping SAM header line: @SQ SN:2570 LN:53096 skipping SAM header line: @SQ SN:2571 LN:52905 skipping SAM header line: @SQ SN:2572 LN:52850 skipping SAM header line: @SQ SN:2573 LN:52888 skipping SAM header line: @SQ SN:2574 LN:52856 skipping SAM header line: @SQ SN:2575 LN:52629 skipping SAM header line: @SQ SN:2576 LN:52679 skipping SAM header line: @SQ SN:2577 LN:52580 skipping SAM header line: @SQ SN:2578 LN:52538 skipping SAM header line: @SQ SN:2579 LN:52440 skipping SAM header line: @SQ SN:2580 LN:52081 skipping SAM header line: @SQ SN:2581 LN:52024 skipping SAM header line: @SQ SN:2582 LN:51983 skipping SAM header line: @SQ SN:2583 LN:51881 skipping SAM header line: @SQ SN:2584 LN:51837 skipping SAM header line: @SQ SN:2585 LN:51927 skipping SAM header line: @SQ SN:2586 LN:51733 skipping SAM header line: @SQ SN:2587 LN:51794 skipping SAM header line: @SQ SN:2588 LN:51859 skipping SAM header line: @SQ SN:2589 LN:51243 skipping SAM header line: @SQ SN:2590 LN:51256 skipping SAM header line: @SQ SN:2591 LN:51279 skipping SAM header line: @SQ SN:2592 LN:64458 skipping SAM header line: @SQ SN:2593 LN:50849 skipping SAM header line: @SQ SN:2594 LN:50760 skipping SAM header line: @SQ SN:2595 LN:50806 skipping SAM header line: @SQ SN:2596 LN:51001 skipping SAM header line: @SQ SN:2597 LN:50563 skipping SAM header line: @SQ SN:2598 LN:50519 skipping SAM header line: @SQ SN:2599 LN:50416 skipping SAM header line: @SQ SN:2600 LN:50374 skipping SAM header line: @SQ SN:2601 LN:50290 skipping SAM header line: @SQ SN:2602 LN:50140 skipping SAM header line: @SQ SN:2603 LN:50173 skipping SAM header line: @SQ SN:2604 LN:35079 skipping SAM header line: @SQ SN:2605 LN:49651 skipping SAM header line: @SQ SN:2606 LN:49726 skipping SAM header line: @SQ SN:2607 LN:46404 skipping SAM header line: @SQ SN:2608 LN:55803 skipping SAM header line: @SQ SN:2609 LN:49558 skipping SAM header line: @SQ SN:2610 LN:49299 skipping SAM header line: @SQ SN:2611 LN:48994 skipping SAM header line: @SQ SN:2612 LN:48865 skipping SAM header line: @SQ SN:2613 LN:28643 skipping SAM header line: @SQ SN:2614 LN:48795 skipping SAM header line: @SQ SN:2615 LN:48658 skipping SAM header line: @SQ SN:2616 LN:48605 skipping SAM header line: @SQ SN:2617 LN:48564 skipping SAM header line: @SQ SN:2618 LN:48445 skipping SAM header line: @SQ SN:2619 LN:20839 skipping SAM header line: @SQ SN:2620 LN:48310 skipping SAM header line: 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skipping SAM header line: @SQ SN:2664 LN:44208 skipping SAM header line: @SQ SN:2665 LN:44136 skipping SAM header line: @SQ SN:2666 LN:44157 skipping SAM header line: @SQ SN:2667 LN:44272 skipping SAM header line: @SQ SN:2668 LN:43993 skipping SAM header line: @SQ SN:2669 LN:43822 skipping SAM header line: @SQ SN:2670 LN:43019 skipping SAM header line: @SQ SN:2671 LN:43763 skipping SAM header line: @SQ SN:2672 LN:43664 skipping SAM header line: @SQ SN:2673 LN:43312 skipping SAM header line: @SQ SN:2674 LN:43143 skipping SAM header line: @SQ SN:2675 LN:43262 skipping SAM header line: @SQ SN:2676 LN:42115 skipping SAM header line: @SQ SN:2677 LN:42699 skipping SAM header line: @SQ SN:2678 LN:42310 skipping SAM header line: @SQ SN:2679 LN:42434 skipping SAM header line: @SQ SN:2680 LN:42282 skipping SAM header line: @SQ SN:2681 LN:42143 skipping SAM header line: @SQ SN:2682 LN:42212 skipping SAM header line: @SQ SN:2683 LN:42102 skipping SAM header line: @SQ SN:2684 LN:41575 skipping SAM header line: @SQ SN:2685 LN:42072 skipping SAM header line: @SQ SN:2686 LN:41890 skipping SAM header line: @SQ SN:2687 LN:41612 skipping SAM header line: @SQ SN:2688 LN:41701 skipping SAM header line: @SQ SN:2689 LN:41743 skipping SAM header line: @SQ SN:2690 LN:41445 skipping SAM header line: @SQ SN:2691 LN:40977 skipping SAM header line: @SQ SN:2692 LN:40970 skipping SAM header line: @SQ SN:2693 LN:40788 skipping SAM header line: @SQ SN:2694 LN:40859 skipping SAM header line: @SQ SN:2695 LN:36056 skipping SAM header line: @SQ SN:2696 LN:41310 skipping SAM header line: @SQ SN:2697 LN:40757 skipping SAM header line: @SQ SN:2698 LN:40786 skipping SAM header line: @SQ SN:2699 LN:40693 skipping SAM header line: @SQ SN:2700 LN:40651 skipping SAM header line: @SQ SN:2701 LN:40341 skipping SAM header line: @SQ SN:2702 LN:34145 skipping SAM header line: @SQ SN:2703 LN:40252 skipping SAM header line: @SQ SN:2704 LN:40108 skipping SAM header line: @SQ SN:2705 LN:40076 skipping SAM header line: @SQ SN:2706 LN:42313 skipping SAM header line: @SQ SN:2707 LN:39949 skipping SAM header line: @SQ SN:2708 LN:22042 skipping SAM header line: @SQ SN:2709 LN:40066 skipping SAM header line: @SQ SN:2710 LN:39947 skipping SAM header line: @SQ SN:2711 LN:39822 skipping SAM header line: @SQ SN:2712 LN:39678 skipping SAM header line: @SQ SN:2713 LN:39685 skipping SAM header line: @SQ SN:2714 LN:39687 skipping SAM header line: @SQ SN:2715 LN:40113 skipping SAM header line: @SQ SN:2716 LN:39646 skipping SAM header line: @SQ SN:2717 LN:39568 skipping SAM header line: @SQ SN:2718 LN:39516 skipping SAM header line: @SQ SN:2719 LN:39573 skipping SAM header line: @SQ SN:2720 LN:39459 skipping SAM header line: @SQ SN:2721 LN:39299 skipping SAM header line: @SQ SN:2722 LN:39321 skipping SAM header line: @SQ SN:2723 LN:39247 skipping SAM header line: @SQ SN:2724 LN:39096 skipping SAM header line: @SQ SN:2725 LN:39259 skipping SAM header line: @SQ SN:2726 LN:33908 skipping SAM header line: @SQ SN:2727 LN:38739 skipping SAM header line: @SQ SN:2728 LN:38553 skipping SAM header line: @SQ SN:2729 LN:38767 skipping SAM header line: @SQ SN:2730 LN:38405 skipping SAM header line: @SQ SN:2731 LN:38624 skipping SAM header line: @SQ SN:2732 LN:38630 skipping SAM header line: @SQ SN:2733 LN:38409 skipping SAM header line: @SQ SN:2734 LN:38484 skipping SAM header line: @SQ SN:2735 LN:39368 skipping SAM header line: @SQ SN:2736 LN:38337 skipping SAM header line: @SQ SN:2737 LN:38241 skipping SAM header line: @SQ SN:2738 LN:38063 skipping SAM header line: @SQ SN:2739 LN:37935 skipping SAM header line: @SQ SN:2740 LN:37937 skipping SAM header line: @SQ SN:2741 LN:37931 skipping SAM header line: @SQ SN:2742 LN:37884 skipping SAM header line: @SQ SN:2743 LN:37767 skipping SAM header line: @SQ SN:2744 LN:37759 skipping SAM header line: @SQ SN:2745 LN:37629 skipping SAM header line: @SQ SN:2746 LN:37520 skipping SAM header line: @SQ SN:2747 LN:37435 skipping SAM header line: @SQ SN:2748 LN:37302 skipping SAM header line: @SQ SN:2749 LN:37274 skipping SAM header line: @SQ SN:2750 LN:37353 skipping SAM header line: @SQ SN:2751 LN:28772 skipping SAM header line: @SQ SN:2752 LN:37190 skipping SAM header line: @SQ SN:2753 LN:36574 skipping SAM header line: @SQ SN:2754 LN:37017 skipping SAM header line: @SQ SN:2755 LN:37166 skipping SAM header line: @SQ SN:2756 LN:37129 skipping SAM header line: @SQ SN:2757 LN:37086 skipping SAM header line: @SQ SN:2758 LN:36981 skipping SAM header line: @SQ SN:2759 LN:31857 skipping SAM header line: @SQ SN:2760 LN:36969 skipping SAM header line: @SQ SN:2761 LN:36928 skipping SAM header line: @SQ SN:2762 LN:36873 skipping SAM header line: @SQ SN:2763 LN:36802 skipping SAM header line: @SQ SN:2764 LN:29307 skipping SAM header line: @SQ SN:2765 LN:36665 skipping SAM header line: @SQ SN:2766 LN:36292 skipping SAM header line: @SQ SN:2767 LN:36431 skipping SAM header line: @SQ SN:2768 LN:35950 skipping SAM header line: @SQ SN:2769 LN:36089 skipping SAM header line: @SQ SN:2770 LN:35934 skipping SAM header line: @SQ SN:2771 LN:36099 skipping SAM header line: @SQ SN:2772 LN:36019 skipping SAM header line: @SQ SN:2773 LN:35602 skipping SAM header line: @SQ SN:2774 LN:35874 skipping SAM header line: @SQ SN:2775 LN:35924 skipping SAM header line: @SQ SN:2776 LN:35859 skipping SAM header line: @SQ SN:2777 LN:35905 skipping SAM header line: @SQ SN:2778 LN:35845 skipping SAM header line: @SQ SN:2779 LN:35758 skipping SAM header line: @SQ SN:2780 LN:35663 skipping SAM header line: @SQ SN:2781 LN:35699 skipping SAM header line: @SQ SN:2782 LN:35561 skipping SAM header line: @SQ SN:2783 LN:35490 skipping SAM header line: @SQ SN:2784 LN:35321 skipping SAM header line: @SQ SN:2785 LN:35327 skipping SAM header line: @SQ SN:2786 LN:35328 skipping SAM header line: @SQ SN:2787 LN:35244 skipping SAM header line: @SQ SN:2788 LN:35213 skipping SAM header line: @SQ SN:2789 LN:35134 skipping SAM header line: @SQ SN:2790 LN:35060 skipping SAM header line: @SQ SN:2791 LN:25419 skipping SAM header line: @SQ SN:2792 LN:35014 skipping SAM header line: @SQ SN:2793 LN:34995 skipping SAM header line: @SQ SN:2794 LN:34502 skipping SAM header line: @SQ SN:2795 LN:34637 skipping SAM header line: @SQ SN:2796 LN:34756 skipping SAM header line: @SQ SN:2797 LN:32114 skipping SAM header line: @SQ SN:2798 LN:34592 skipping SAM header line: @SQ SN:2799 LN:34646 skipping SAM header line: @SQ SN:2800 LN:34547 skipping SAM header line: @SQ SN:2801 LN:34564 skipping SAM header line: @SQ SN:2802 LN:34630 skipping SAM header line: @SQ SN:2803 LN:34403 skipping SAM header line: @SQ SN:2804 LN:34158 skipping SAM header line: @SQ SN:2805 LN:26329 skipping SAM header line: @SQ SN:2806 LN:34169 skipping SAM header line: @SQ SN:2807 LN:33949 skipping SAM header line: @SQ SN:2808 LN:33709 skipping SAM header line: @SQ SN:2809 LN:28512 skipping SAM header line: @SQ SN:2810 LN:28778 skipping SAM header line: @SQ SN:2811 LN:33400 skipping SAM header line: @SQ SN:2812 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header line: @SQ SN:3025 LN:20911 skipping SAM header line: @SQ SN:3026 LN:20532 skipping SAM header line: @SQ SN:3027 LN:20919 skipping SAM header line: @SQ SN:3028 LN:20817 skipping SAM header line: @SQ SN:3029 LN:20652 skipping SAM header line: @SQ SN:3030 LN:20462 skipping SAM header line: @SQ SN:3031 LN:20791 skipping SAM header line: @SQ SN:3032 LN:20632 skipping SAM header line: @SQ SN:3033 LN:20540 skipping SAM header line: @SQ SN:3034 LN:20616 skipping SAM header line: @SQ SN:3035 LN:20535 skipping SAM header line: @SQ SN:3036 LN:20509 skipping SAM header line: @SQ SN:3037 LN:20511 skipping SAM header line: @SQ SN:3038 LN:20399 skipping SAM header line: @SQ SN:3039 LN:20437 skipping SAM header line: @SQ SN:3040 LN:20260 skipping SAM header line: @SQ SN:3041 LN:20304 skipping SAM header line: @SQ SN:3042 LN:20219 skipping SAM header line: @SQ SN:3043 LN:20160 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/froger/Mcap_Genome/ -p 4 -score_min L,0,-0.6 -u 10000000 --non_directional -1 /gscratch/srlab/sr320/data/froger/trim/Mc/Meth13.fastp-trim.202003062040_R1_001.fastq.gz -2 /gscratch/srlab/sr320/data/froger/trim/Mc/Meth13.fastp-trim.202003062040_R2_001.fastq.gz -o Mcap_full-u1M" Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 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Exiting.. Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Processed lines: 5500000 Now waiting for all child processes to complete Processed lines: 5500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt' Merging from these individual files: Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.1 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.2 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.3 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.4 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.5 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.6 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.7 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.8 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.9 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.10 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.11 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.12 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.13 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.14 Processed 5622764 lines in total Total number of methylation call strings processed: 11245528 Final Cytosine Methylation Report ================================= Total number of C's analysed: 187767802 Total methylated C's in CpG context: 5409497 Total methylated C's in CHG context: 278510 Total methylated C's in CHH context: 686713 Total C to T conversions in CpG context: 34930509 Total C to T conversions in CHG context: 34183551 Total C to T conversions in CHH context: 112279022 C methylated in CpG context: 13.4% C methylated in CHG context: 0.8% C methylated in CHH context: 0.6% Merging individual M-bias reports into overall M-bias statistics from these 14 individual files: Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.1.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.2.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.3.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.4.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.5.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.6.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.7.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.8.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.9.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.10.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.11.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.12.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.13.mbias Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt.14.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 148 Maximum read length of Read 2: 146 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 148 Maximum read length of Read 2: 146 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt contains data -> kept Using these input files: CpG_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CpG_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CpG_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CpG_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CHG_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CHG_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CHG_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CHG_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CHH_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CHH_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CHH_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt CHH_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt Writing bedGraph to file: Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Merging all input files and sorting everything in memory instead of writing out individual chromosome files... Writing all merged methylation calls to temp file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged Finished writing methylation calls from CpG_OT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_CTOT_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_CTOB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_OB_Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.txt to merged temp file Sorting input file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged by positions (using -S of 75%) Successfully deleted the temporary input file Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged Finished BedGraph conversion ... Checking file >>Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file >Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context from the original top strand to CpG_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the complementary to original top strand to CpG_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the complementary to original bottom strand to CpG_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the original bottom strand to CpG_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the original top strand to CHG_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the complementary to original top strand to CHG_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the complementary to original bottom strand to CHG_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the original bottom strand to CHG_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the original top strand to CHH_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the complementary to original top strand to CHH_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the complementary to original bottom strand to CHH_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the original bottom strand to CHH_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:1 LN:3259165 skipping SAM header line: @SQ SN:2 LN:3468816 skipping SAM header line: @SQ SN:3 LN:700192 skipping SAM header line: @SQ SN:4 LN:2934407 skipping SAM header line: @SQ SN:5 LN:2430108 skipping SAM header line: @SQ SN:6 LN:2758956 skipping SAM header line: @SQ SN:7 LN:2199593 skipping SAM header line: @SQ SN:8 LN:63180 skipping SAM header line: @SQ SN:9 LN:2265284 skipping SAM header line: @SQ SN:10 LN:2133031 skipping SAM header line: @SQ SN:11 LN:321139 skipping SAM header line: @SQ SN:12 LN:2060969 skipping SAM header line: @SQ SN:13 LN:2130412 skipping SAM header line: @SQ SN:14 LN:1997637 skipping SAM header line: @SQ SN:15 LN:2070015 skipping SAM header line: @SQ SN:16 LN:1944206 skipping SAM header line: @SQ SN:17 LN:2086788 skipping SAM header line: @SQ SN:18 LN:1961032 skipping SAM header line: @SQ SN:19 LN:2784121 skipping SAM header line: @SQ SN:20 LN:1774193 skipping SAM header line: @SQ SN:21 LN:1917492 skipping SAM header line: @SQ SN:22 LN:767896 skipping SAM header line: @SQ SN:23 LN:1953587 skipping SAM header line: @SQ SN:24 LN:1911142 skipping SAM header line: @SQ SN:25 LN:1913817 skipping SAM header line: @SQ SN:26 LN:1804681 skipping SAM header line: @SQ SN:27 LN:1851931 skipping SAM header line: @SQ SN:28 LN:1794943 skipping SAM header line: @SQ SN:29 LN:1682159 skipping SAM header line: @SQ SN:30 LN:1713494 skipping SAM header line: @SQ SN:31 LN:1624384 skipping SAM header line: @SQ SN:32 LN:1703322 skipping SAM header line: @SQ SN:33 LN:1697854 skipping SAM header line: @SQ SN:34 LN:1681457 skipping SAM header line: @SQ SN:35 LN:1704315 skipping SAM header line: @SQ SN:36 LN:1721755 skipping SAM header line: @SQ SN:37 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header line: @SQ SN:80 LN:1309361 skipping SAM header line: @SQ SN:81 LN:1341618 skipping SAM header line: @SQ SN:82 LN:1346785 skipping SAM header line: @SQ SN:83 LN:1333289 skipping SAM header line: @SQ SN:84 LN:1211459 skipping SAM header line: @SQ SN:85 LN:1283853 skipping SAM header line: @SQ SN:86 LN:1290567 skipping SAM header line: @SQ SN:87 LN:1192965 skipping SAM header line: @SQ SN:88 LN:1291894 skipping SAM header line: @SQ SN:89 LN:1260068 skipping SAM header line: @SQ SN:90 LN:1252728 skipping SAM header line: @SQ SN:91 LN:1271595 skipping SAM header line: @SQ SN:92 LN:1230537 skipping SAM header line: @SQ SN:93 LN:1237625 skipping SAM header line: @SQ SN:94 LN:1187499 skipping SAM header line: @SQ SN:95 LN:85829 skipping SAM header line: @SQ SN:96 LN:1221334 skipping SAM header line: @SQ SN:97 LN:1247042 skipping SAM header line: @SQ SN:98 LN:1216221 skipping SAM header line: @SQ SN:99 LN:1155919 skipping SAM header line: @SQ SN:100 LN:1199322 skipping SAM header line: 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line: @SQ SN:122 LN:1136263 skipping SAM header line: @SQ SN:123 LN:1129561 skipping SAM header line: @SQ SN:124 LN:1088222 skipping SAM header line: @SQ SN:125 LN:1134195 skipping SAM header line: @SQ SN:126 LN:1122153 skipping SAM header line: @SQ SN:127 LN:1090085 skipping SAM header line: @SQ SN:128 LN:1108877 skipping SAM header line: @SQ SN:129 LN:1069273 skipping SAM header line: @SQ SN:130 LN:81855 skipping SAM header line: @SQ SN:131 LN:1051189 skipping SAM header line: @SQ SN:132 LN:1107173 skipping SAM header line: @SQ SN:133 LN:1100872 skipping SAM header line: @SQ SN:134 LN:1069836 skipping SAM header line: @SQ SN:135 LN:1014124 skipping SAM header line: @SQ SN:136 LN:1077171 skipping SAM header line: @SQ SN:137 LN:1075285 skipping SAM header line: @SQ SN:138 LN:965987 skipping SAM header line: @SQ SN:139 LN:1064949 skipping SAM header line: @SQ SN:140 LN:972370 skipping SAM header line: @SQ SN:141 LN:1092226 skipping SAM header line: @SQ SN:142 LN:1076623 skipping SAM 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skipping SAM header line: @SQ SN:228 LN:860785 skipping SAM header line: @SQ SN:229 LN:878544 skipping SAM header line: @SQ SN:230 LN:145843 skipping SAM header line: @SQ SN:231 LN:871373 skipping SAM header line: @SQ SN:232 LN:884402 skipping SAM header line: @SQ SN:233 LN:881045 skipping SAM header line: @SQ SN:234 LN:830625 skipping SAM header line: @SQ SN:235 LN:869322 skipping SAM header line: @SQ SN:236 LN:851209 skipping SAM header line: @SQ SN:237 LN:280319 skipping SAM header line: @SQ SN:238 LN:843214 skipping SAM header line: @SQ SN:239 LN:853732 skipping SAM header line: @SQ SN:240 LN:856228 skipping SAM header line: @SQ SN:241 LN:845687 skipping SAM header line: @SQ SN:242 LN:839849 skipping SAM header line: @SQ SN:243 LN:807631 skipping SAM header line: @SQ SN:244 LN:836614 skipping SAM header line: @SQ SN:245 LN:838179 skipping SAM header line: @SQ SN:246 LN:819456 skipping SAM header line: @SQ SN:247 LN:829478 skipping SAM header line: @SQ SN:248 LN:823142 skipping SAM 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LN:642524 skipping SAM header line: @SQ SN:377 LN:667531 skipping SAM header line: @SQ SN:378 LN:587113 skipping SAM header line: @SQ SN:379 LN:725572 skipping SAM header line: @SQ SN:380 LN:644870 skipping SAM header line: @SQ SN:381 LN:652264 skipping SAM header line: @SQ SN:382 LN:655625 skipping SAM header line: @SQ SN:383 LN:644073 skipping SAM header line: @SQ SN:384 LN:621181 skipping SAM header line: @SQ SN:385 LN:645312 skipping SAM header line: @SQ SN:386 LN:633171 skipping SAM header line: @SQ SN:387 LN:621782 skipping SAM header line: @SQ SN:388 LN:634850 skipping SAM header line: @SQ SN:389 LN:638235 skipping SAM header line: @SQ SN:390 LN:545854 skipping SAM header line: @SQ SN:391 LN:633275 skipping SAM header line: @SQ SN:392 LN:632205 skipping SAM header line: @SQ SN:393 LN:583470 skipping SAM header line: @SQ SN:394 LN:623334 skipping SAM header line: @SQ SN:395 LN:598070 skipping SAM header line: @SQ SN:396 LN:615230 skipping SAM header line: @SQ SN:397 LN:615055 skipping SAM header line: @SQ SN:398 LN:621749 skipping SAM header line: @SQ SN:399 LN:622641 skipping SAM header line: @SQ SN:400 LN:600152 skipping SAM header line: @SQ SN:401 LN:613118 skipping SAM header line: @SQ SN:402 LN:599791 skipping SAM header line: @SQ SN:403 LN:625631 skipping SAM header line: @SQ SN:404 LN:611913 skipping SAM header line: @SQ SN:405 LN:626054 skipping SAM header line: @SQ SN:406 LN:618578 skipping SAM header line: @SQ SN:407 LN:600051 skipping SAM header line: @SQ SN:408 LN:575466 skipping SAM header line: @SQ SN:409 LN:608701 skipping SAM header line: @SQ SN:410 LN:611059 skipping SAM header line: @SQ SN:411 LN:612833 skipping SAM header line: @SQ SN:412 LN:612841 skipping SAM header line: @SQ SN:413 LN:589843 skipping SAM header line: @SQ SN:414 LN:610237 skipping SAM header line: @SQ SN:415 LN:587061 skipping SAM header line: @SQ SN:416 LN:595025 skipping SAM header line: @SQ SN:417 LN:161631 skipping SAM header line: @SQ SN:418 LN:601009 skipping SAM header line: @SQ SN:419 LN:575792 skipping SAM header line: @SQ SN:420 LN:603094 skipping SAM header line: @SQ SN:421 LN:609463 skipping SAM header line: @SQ SN:422 LN:598076 skipping SAM header line: @SQ SN:423 LN:470589 skipping SAM header line: @SQ SN:424 LN:587771 skipping SAM header line: @SQ SN:425 LN:605184 skipping SAM header line: @SQ SN:426 LN:604403 skipping SAM header line: @SQ SN:427 LN:600125 skipping SAM header line: @SQ SN:428 LN:620598 skipping SAM header line: @SQ SN:429 LN:587584 skipping SAM header line: @SQ SN:430 LN:598740 skipping SAM header line: @SQ SN:431 LN:625547 skipping SAM header line: @SQ SN:432 LN:595354 skipping SAM header line: @SQ SN:433 LN:599720 skipping SAM header line: @SQ SN:434 LN:599950 skipping SAM header line: @SQ SN:435 LN:111371 skipping SAM header line: @SQ SN:436 LN:595002 skipping SAM header line: @SQ SN:437 LN:566460 skipping SAM header line: @SQ SN:438 LN:595148 skipping SAM header line: @SQ SN:439 LN:588360 skipping SAM header line: @SQ SN:440 LN:490454 skipping SAM header line: @SQ SN:441 LN:600678 skipping SAM header line: @SQ SN:442 LN:600084 skipping SAM header line: @SQ SN:443 LN:574125 skipping SAM header line: @SQ SN:444 LN:587509 skipping SAM header line: @SQ SN:445 LN:587594 skipping SAM header line: @SQ SN:446 LN:596445 skipping SAM header line: @SQ SN:447 LN:536900 skipping SAM header line: @SQ SN:448 LN:586986 skipping SAM header line: @SQ SN:449 LN:530954 skipping SAM header line: @SQ SN:450 LN:501158 skipping SAM header line: @SQ SN:451 LN:583793 skipping SAM header line: @SQ SN:452 LN:578365 skipping SAM header line: @SQ SN:453 LN:582895 skipping SAM header line: @SQ SN:454 LN:578969 skipping SAM header line: @SQ SN:455 LN:581618 skipping SAM header line: @SQ SN:456 LN:510952 skipping SAM header line: @SQ SN:457 LN:580424 skipping SAM header line: @SQ SN:458 LN:581303 skipping SAM header line: @SQ SN:459 LN:573012 skipping SAM header line: @SQ SN:460 LN:578425 skipping SAM header line: @SQ SN:461 LN:566703 skipping SAM header line: @SQ SN:462 LN:579403 skipping SAM header line: @SQ SN:463 LN:584138 skipping SAM header line: @SQ SN:464 LN:575617 skipping SAM header line: @SQ SN:465 LN:572581 skipping SAM header line: @SQ SN:466 LN:534558 skipping SAM header line: @SQ SN:467 LN:517773 skipping SAM header line: @SQ SN:468 LN:71509 skipping SAM header line: @SQ SN:469 LN:551605 skipping SAM header line: @SQ SN:470 LN:551149 skipping SAM header line: @SQ SN:471 LN:558920 skipping SAM header line: @SQ SN:472 LN:569790 skipping SAM header line: @SQ SN:473 LN:575543 skipping SAM header line: @SQ SN:474 LN:570375 skipping SAM header line: @SQ SN:475 LN:570020 skipping SAM header line: @SQ SN:476 LN:569037 skipping SAM header line: @SQ SN:477 LN:568945 skipping SAM header line: @SQ SN:478 LN:567414 skipping SAM header line: @SQ SN:479 LN:567422 skipping SAM header line: @SQ SN:480 LN:565746 skipping SAM header line: @SQ SN:481 LN:558202 skipping SAM header line: @SQ SN:482 LN:560620 skipping SAM header line: @SQ SN:483 LN:576607 skipping SAM header line: @SQ SN:484 LN:547167 skipping SAM header line: @SQ SN:485 LN:559992 skipping SAM header line: @SQ SN:486 LN:524518 skipping SAM header line: @SQ SN:487 LN:579447 skipping SAM header line: @SQ SN:488 LN:463101 skipping SAM header line: @SQ SN:489 LN:552563 skipping SAM header line: @SQ SN:490 LN:538328 skipping SAM header line: @SQ SN:491 LN:556977 skipping SAM header line: @SQ SN:492 LN:569539 skipping SAM header line: @SQ SN:493 LN:571496 skipping SAM header line: @SQ SN:494 LN:552813 skipping SAM header line: @SQ SN:495 LN:560492 skipping SAM header line: @SQ SN:496 LN:97609 skipping SAM header line: @SQ SN:497 LN:540623 skipping SAM header line: @SQ SN:498 LN:528357 skipping SAM header line: @SQ SN:499 LN:547607 skipping SAM header line: @SQ SN:500 LN:530179 skipping SAM header line: @SQ SN:501 LN:500029 skipping SAM header line: @SQ SN:502 LN:53510 skipping SAM header line: @SQ SN:503 LN:544824 skipping SAM header line: @SQ SN:504 LN:545115 skipping SAM header line: @SQ SN:505 LN:555815 skipping SAM header line: @SQ SN:506 LN:570396 skipping SAM header line: @SQ SN:507 LN:539574 skipping SAM header line: @SQ SN:508 LN:538865 skipping SAM header line: @SQ SN:509 LN:537929 skipping SAM header line: @SQ SN:510 LN:519071 skipping SAM header line: @SQ SN:511 LN:523199 skipping SAM header line: @SQ SN:512 LN:538148 skipping SAM header line: @SQ SN:513 LN:202321 skipping SAM header line: @SQ SN:514 LN:536663 skipping SAM header line: @SQ SN:515 LN:531172 skipping SAM header line: @SQ SN:516 LN:533537 skipping SAM header line: @SQ SN:517 LN:531129 skipping SAM header line: @SQ SN:518 LN:440934 skipping SAM header line: @SQ SN:519 LN:485156 skipping SAM header line: @SQ SN:520 LN:273908 skipping SAM header line: @SQ SN:521 LN:527752 skipping SAM header line: @SQ SN:522 LN:512991 skipping SAM header line: @SQ SN:523 LN:533526 skipping SAM header line: @SQ SN:524 LN:530815 skipping SAM header line: @SQ SN:525 LN:530007 skipping SAM header line: @SQ SN:526 LN:574263 skipping SAM header line: @SQ SN:527 LN:529636 skipping SAM header line: @SQ SN:528 LN:517086 skipping SAM header line: @SQ SN:529 LN:532209 skipping SAM header line: @SQ SN:530 LN:549308 skipping SAM header line: @SQ SN:531 LN:525903 skipping SAM header line: @SQ SN:532 LN:119706 skipping SAM header line: @SQ SN:533 LN:513614 skipping SAM header line: @SQ SN:534 LN:504850 skipping SAM header line: @SQ SN:535 LN:517574 skipping SAM header line: @SQ SN:536 LN:87592 skipping SAM header line: @SQ SN:537 LN:520353 skipping SAM header line: @SQ SN:538 LN:521348 skipping SAM header line: @SQ SN:539 LN:530593 skipping SAM header line: @SQ SN:540 LN:495380 skipping SAM header line: @SQ SN:541 LN:425043 skipping SAM header line: @SQ SN:542 LN:530805 skipping SAM header line: @SQ SN:543 LN:514973 skipping SAM header line: @SQ SN:544 LN:522518 skipping SAM header line: @SQ SN:545 LN:543214 skipping SAM header line: @SQ SN:546 LN:534800 skipping SAM header line: @SQ SN:547 LN:502851 skipping SAM header line: @SQ SN:548 LN:483827 skipping SAM header line: @SQ SN:549 LN:512847 skipping SAM header line: @SQ SN:550 LN:511675 skipping SAM header line: @SQ SN:551 LN:514580 skipping SAM header line: @SQ SN:552 LN:539493 skipping SAM header line: @SQ SN:553 LN:507885 skipping SAM header line: @SQ SN:554 LN:515365 skipping SAM header line: @SQ SN:555 LN:469598 skipping SAM header line: @SQ SN:556 LN:481181 skipping SAM header line: @SQ SN:557 LN:508295 skipping SAM header line: @SQ SN:558 LN:503205 skipping SAM header line: @SQ SN:559 LN:507269 skipping SAM header line: @SQ SN:560 LN:499689 skipping SAM header line: @SQ SN:561 LN:499996 skipping SAM header line: @SQ SN:562 LN:508243 skipping SAM header line: @SQ SN:563 LN:500844 skipping SAM header line: @SQ SN:564 LN:508062 skipping SAM header line: @SQ SN:565 LN:501448 skipping SAM header line: @SQ SN:566 LN:474183 skipping SAM header line: @SQ SN:567 LN:367063 skipping SAM header line: @SQ SN:568 LN:498357 skipping SAM header line: @SQ SN:569 LN:513150 skipping SAM header line: @SQ SN:570 LN:498906 skipping SAM header line: @SQ SN:571 LN:498700 skipping SAM header line: @SQ SN:572 LN:472164 skipping SAM header line: @SQ SN:573 LN:507436 skipping SAM header line: @SQ SN:574 LN:505070 skipping SAM header line: @SQ SN:575 LN:497506 skipping SAM header line: @SQ SN:576 LN:496180 skipping SAM header line: @SQ SN:577 LN:495190 skipping SAM header line: @SQ SN:578 LN:486825 skipping SAM header line: @SQ SN:579 LN:491352 skipping SAM header line: @SQ SN:580 LN:493215 skipping SAM header line: @SQ SN:581 LN:502157 skipping SAM header line: @SQ SN:582 LN:507220 skipping SAM header line: @SQ SN:583 LN:491273 skipping SAM header line: @SQ SN:584 LN:488168 skipping SAM header line: @SQ SN:585 LN:490515 skipping SAM header line: @SQ SN:586 LN:448915 skipping SAM header line: @SQ SN:587 LN:491040 skipping SAM header line: @SQ SN:588 LN:102780 skipping SAM header line: @SQ SN:589 LN:491591 skipping SAM header line: @SQ SN:590 LN:485753 skipping SAM header line: @SQ SN:591 LN:485704 skipping SAM header line: @SQ SN:592 LN:485033 skipping SAM header line: @SQ SN:593 LN:481401 skipping SAM header line: @SQ SN:594 LN:502831 skipping SAM header line: @SQ SN:595 LN:483572 skipping SAM header line: @SQ SN:596 LN:44697 skipping SAM header line: @SQ SN:597 LN:483527 skipping SAM header line: @SQ SN:598 LN:480775 skipping SAM header line: @SQ SN:599 LN:475985 skipping SAM header line: @SQ SN:600 LN:474163 skipping SAM header line: @SQ SN:601 LN:55408 skipping SAM header line: @SQ SN:602 LN:313213 skipping SAM header line: @SQ SN:603 LN:482861 skipping SAM header line: @SQ SN:604 LN:477177 skipping SAM header line: @SQ SN:605 LN:477769 skipping SAM header line: @SQ SN:606 LN:474382 skipping SAM header line: @SQ SN:607 LN:474193 skipping SAM header line: @SQ SN:608 LN:427787 skipping SAM header line: @SQ SN:609 LN:455860 skipping SAM header line: @SQ SN:610 LN:480570 skipping SAM header line: @SQ SN:611 LN:469516 skipping SAM header line: @SQ SN:612 LN:478916 skipping SAM header line: @SQ SN:613 LN:459886 skipping SAM header line: @SQ SN:614 LN:448698 skipping SAM header line: @SQ SN:615 LN:469093 skipping SAM header line: @SQ SN:616 LN:470170 skipping SAM header line: @SQ SN:617 LN:466607 skipping SAM header line: @SQ SN:618 LN:409627 skipping SAM header line: @SQ SN:619 LN:475660 skipping SAM header line: @SQ SN:620 LN:460872 skipping SAM header line: @SQ SN:621 LN:474897 skipping SAM header line: @SQ SN:622 LN:463119 skipping SAM header line: @SQ SN:623 LN:481900 skipping SAM header line: @SQ SN:624 LN:464739 skipping SAM header line: @SQ SN:625 LN:460648 skipping SAM header line: @SQ SN:626 LN:469521 skipping SAM header line: @SQ SN:627 LN:462935 skipping SAM header line: @SQ SN:628 LN:456398 skipping SAM header line: @SQ SN:629 LN:461014 skipping SAM header line: @SQ SN:630 LN:464462 skipping SAM header line: @SQ SN:631 LN:463768 skipping SAM header line: @SQ SN:632 LN:451112 skipping SAM header line: @SQ SN:633 LN:449639 skipping SAM header line: @SQ SN:634 LN:459764 skipping SAM header line: @SQ SN:635 LN:468137 skipping SAM header line: @SQ SN:636 LN:472955 skipping SAM header line: @SQ SN:637 LN:448732 skipping SAM header line: @SQ SN:638 LN:444434 skipping SAM header line: @SQ SN:639 LN:456211 skipping SAM header line: @SQ SN:640 LN:453683 skipping SAM header line: @SQ SN:641 LN:455740 skipping SAM header line: @SQ SN:642 LN:455536 skipping SAM header line: @SQ SN:643 LN:456391 skipping SAM header line: @SQ SN:644 LN:461110 skipping SAM header line: @SQ SN:645 LN:450701 skipping SAM header line: @SQ SN:646 LN:448049 skipping SAM header line: @SQ SN:647 LN:450857 skipping SAM header line: @SQ SN:648 LN:453200 skipping SAM header line: @SQ SN:649 LN:452056 skipping SAM header line: @SQ SN:650 LN:347654 skipping SAM header line: @SQ SN:651 LN:474497 skipping SAM header line: @SQ SN:652 LN:449026 skipping SAM header line: @SQ SN:653 LN:449685 skipping SAM header line: @SQ SN:654 LN:450282 skipping SAM header line: @SQ SN:655 LN:356288 skipping SAM header line: @SQ SN:656 LN:425557 skipping SAM header line: @SQ SN:657 LN:449128 skipping SAM header line: @SQ SN:658 LN:448219 skipping SAM header line: @SQ SN:659 LN:452944 skipping SAM header line: @SQ SN:660 LN:456621 skipping SAM header line: @SQ SN:661 LN:437033 skipping SAM header line: @SQ SN:662 LN:447083 skipping SAM header line: @SQ SN:663 LN:453111 skipping SAM header line: @SQ SN:664 LN:426810 skipping SAM header line: @SQ SN:665 LN:445139 skipping SAM header line: @SQ SN:666 LN:445066 skipping SAM header line: @SQ SN:667 LN:444892 skipping SAM header line: @SQ SN:668 LN:448521 skipping SAM header line: @SQ SN:669 LN:443692 skipping SAM header line: @SQ SN:670 LN:391903 skipping SAM header line: @SQ SN:671 LN:423152 skipping SAM header line: @SQ SN:672 LN:403722 skipping SAM header line: @SQ SN:673 LN:418819 skipping SAM header line: @SQ SN:674 LN:432438 skipping SAM header line: @SQ SN:675 LN:438917 skipping SAM header line: @SQ SN:676 LN:147096 skipping SAM header line: @SQ SN:677 LN:436480 skipping SAM header line: @SQ SN:678 LN:436231 skipping SAM header line: @SQ SN:679 LN:427776 skipping SAM header line: @SQ SN:680 LN:425854 skipping SAM header line: @SQ SN:681 LN:435429 skipping SAM header line: @SQ SN:682 LN:437488 skipping SAM header line: @SQ SN:683 LN:446216 skipping SAM header line: @SQ SN:684 LN:424550 skipping SAM header line: @SQ SN:685 LN:182265 skipping SAM header line: @SQ SN:686 LN:433824 skipping SAM header line: @SQ SN:687 LN:741164 skipping SAM header line: @SQ SN:688 LN:427018 skipping SAM header line: @SQ SN:689 LN:431173 skipping SAM header line: @SQ SN:690 LN:463616 skipping SAM header line: @SQ SN:691 LN:420764 skipping SAM header line: @SQ SN:692 LN:434721 skipping SAM header line: @SQ SN:693 LN:412504 skipping SAM header line: @SQ SN:694 LN:429344 skipping SAM header line: @SQ SN:695 LN:404055 skipping SAM header line: @SQ SN:696 LN:234456 skipping SAM header line: @SQ SN:697 LN:289569 skipping SAM header line: @SQ SN:698 LN:426645 skipping SAM header line: @SQ SN:699 LN:427205 skipping SAM header line: @SQ SN:700 LN:435412 skipping SAM header line: @SQ SN:701 LN:425139 skipping SAM header line: @SQ SN:702 LN:422562 skipping SAM header line: @SQ SN:703 LN:424435 skipping SAM header line: @SQ SN:704 LN:424247 skipping SAM header line: @SQ SN:705 LN:423916 skipping SAM header line: @SQ SN:706 LN:378426 skipping SAM header line: @SQ SN:707 LN:422545 skipping SAM header line: @SQ SN:708 LN:405782 skipping SAM header line: @SQ SN:709 LN:421031 skipping SAM header line: @SQ SN:710 LN:435710 skipping SAM header line: @SQ SN:711 LN:420506 skipping SAM header line: @SQ SN:712 LN:402597 skipping SAM header line: @SQ SN:713 LN:416603 skipping SAM header line: @SQ SN:714 LN:429444 skipping SAM header line: @SQ SN:715 LN:432166 skipping SAM header line: @SQ SN:716 LN:235192 skipping SAM header line: @SQ SN:717 LN:400324 skipping SAM header line: @SQ SN:718 LN:415365 skipping SAM header line: @SQ SN:719 LN:418292 skipping SAM header line: @SQ SN:720 LN:414387 skipping SAM header line: @SQ SN:721 LN:79852 skipping SAM header line: @SQ SN:722 LN:414968 skipping SAM header line: @SQ SN:723 LN:413712 skipping SAM header line: @SQ SN:724 LN:48430 skipping SAM header line: @SQ SN:725 LN:430069 skipping SAM header line: @SQ SN:726 LN:430606 skipping SAM header line: @SQ SN:727 LN:406873 skipping SAM header line: @SQ SN:728 LN:284858 skipping SAM header line: @SQ SN:729 LN:419837 skipping SAM header line: @SQ SN:730 LN:397986 skipping SAM header line: @SQ SN:731 LN:401458 skipping SAM header line: @SQ SN:732 LN:394891 skipping SAM header line: @SQ SN:733 LN:412565 skipping SAM header line: @SQ SN:734 LN:409607 skipping SAM header line: @SQ SN:735 LN:409953 skipping SAM header line: @SQ SN:736 LN:407838 skipping SAM header line: @SQ SN:737 LN:415301 skipping SAM header line: @SQ SN:738 LN:406847 skipping SAM header line: @SQ SN:739 LN:411697 skipping SAM header line: @SQ SN:740 LN:398437 skipping SAM header line: @SQ SN:741 LN:405831 skipping SAM header line: @SQ SN:742 LN:99037 skipping SAM header line: @SQ SN:743 LN:389039 skipping SAM header line: @SQ SN:744 LN:398687 skipping SAM header line: @SQ SN:745 LN:130670 skipping SAM header line: @SQ SN:746 LN:444002 skipping SAM header line: @SQ SN:747 LN:402043 skipping SAM header line: @SQ SN:748 LN:383610 skipping SAM header line: @SQ SN:749 LN:390984 skipping SAM header line: @SQ SN:750 LN:436599 skipping SAM header line: @SQ SN:751 LN:417599 skipping SAM header line: @SQ SN:752 LN:385831 skipping SAM header line: @SQ SN:753 LN:395460 skipping SAM header line: @SQ SN:754 LN:395762 skipping SAM header line: @SQ SN:755 LN:397251 skipping SAM header line: @SQ SN:756 LN:397436 skipping SAM header line: @SQ SN:757 LN:392298 skipping SAM header line: @SQ SN:758 LN:395736 skipping SAM header line: @SQ SN:759 LN:387508 skipping SAM header line: @SQ SN:760 LN:398065 skipping SAM header line: @SQ SN:761 LN:344936 skipping SAM header line: @SQ SN:762 LN:393232 skipping SAM header line: @SQ SN:763 LN:381506 skipping SAM header line: @SQ SN:764 LN:392087 skipping SAM header line: @SQ SN:765 LN:316368 skipping SAM header line: @SQ SN:766 LN:394948 skipping SAM header line: @SQ SN:767 LN:383267 skipping SAM header line: @SQ SN:768 LN:46266 skipping SAM header line: @SQ SN:769 LN:387910 skipping SAM header line: @SQ SN:770 LN:400889 skipping SAM header line: @SQ SN:771 LN:547451 skipping SAM header line: @SQ SN:772 LN:371662 skipping SAM header line: @SQ SN:773 LN:386775 skipping SAM header line: @SQ SN:774 LN:391584 skipping SAM header line: @SQ SN:775 LN:384950 skipping SAM header line: @SQ SN:776 LN:396881 skipping SAM header line: @SQ SN:777 LN:366614 skipping SAM header line: @SQ SN:778 LN:397433 skipping SAM header line: @SQ SN:779 LN:396173 skipping SAM header line: @SQ SN:780 LN:381046 skipping SAM header line: @SQ SN:781 LN:388134 skipping SAM header line: @SQ SN:782 LN:380597 skipping SAM header line: @SQ SN:783 LN:381881 skipping SAM header line: @SQ SN:784 LN:373782 skipping SAM header line: @SQ SN:785 LN:411776 skipping SAM header line: @SQ SN:786 LN:386877 skipping SAM header line: @SQ SN:787 LN:384798 skipping SAM header line: @SQ SN:788 LN:383900 skipping SAM header line: @SQ SN:789 LN:371178 skipping SAM header line: @SQ SN:790 LN:72726 skipping SAM header line: @SQ SN:791 LN:382892 skipping SAM header line: @SQ SN:792 LN:396886 skipping SAM header line: @SQ SN:793 LN:381384 skipping SAM header line: @SQ SN:794 LN:392348 skipping SAM header line: @SQ SN:795 LN:375776 skipping SAM header line: @SQ SN:796 LN:372990 skipping SAM header line: @SQ SN:797 LN:298488 skipping SAM header line: @SQ SN:798 LN:370460 skipping SAM header line: @SQ SN:799 LN:379978 skipping SAM header line: @SQ SN:800 LN:381596 skipping SAM header line: @SQ SN:801 LN:379742 skipping SAM header line: @SQ SN:802 LN:394013 skipping SAM header line: @SQ SN:803 LN:379113 skipping SAM header line: @SQ SN:804 LN:379013 skipping SAM header line: @SQ SN:805 LN:360050 skipping SAM header line: @SQ SN:806 LN:386700 skipping SAM header line: @SQ SN:807 LN:378051 skipping SAM header line: @SQ SN:808 LN:377770 skipping SAM header line: @SQ SN:809 LN:368183 skipping SAM header line: @SQ SN:810 LN:376624 skipping SAM header line: @SQ SN:811 LN:375857 skipping SAM header line: @SQ SN:812 LN:381882 skipping SAM header line: @SQ SN:813 LN:374696 skipping SAM header line: @SQ SN:814 LN:42156 skipping SAM header line: @SQ SN:815 LN:372968 skipping SAM header line: @SQ SN:816 LN:373635 skipping SAM header line: @SQ SN:817 LN:373320 skipping SAM header line: @SQ SN:818 LN:366336 skipping SAM header line: @SQ SN:819 LN:352869 skipping SAM header line: @SQ SN:820 LN:40412 skipping SAM header line: @SQ SN:821 LN:371267 skipping SAM header line: @SQ SN:822 LN:369663 skipping SAM header line: @SQ SN:823 LN:369681 skipping SAM header line: @SQ SN:824 LN:353668 skipping SAM header line: @SQ SN:825 LN:369950 skipping SAM header line: @SQ SN:826 LN:368782 skipping SAM header line: @SQ SN:827 LN:304921 skipping SAM header line: @SQ SN:828 LN:370762 skipping SAM header line: @SQ SN:829 LN:371122 skipping SAM header line: @SQ SN:830 LN:366251 skipping SAM header line: @SQ SN:831 LN:371714 skipping SAM header line: @SQ SN:832 LN:359102 skipping SAM header line: @SQ SN:833 LN:365317 skipping SAM header line: @SQ SN:834 LN:367204 skipping SAM header line: @SQ SN:835 LN:365964 skipping SAM header line: @SQ SN:836 LN:364988 skipping SAM header line: @SQ SN:837 LN:361366 skipping SAM header line: @SQ SN:838 LN:360139 skipping SAM header line: @SQ SN:839 LN:364473 skipping SAM header line: @SQ SN:840 LN:371420 skipping SAM header line: @SQ SN:841 LN:347574 skipping SAM header line: @SQ SN:842 LN:369654 skipping SAM header line: @SQ SN:843 LN:266194 skipping SAM header line: @SQ SN:844 LN:367180 skipping SAM header line: @SQ SN:845 LN:367810 skipping SAM header line: @SQ SN:846 LN:357723 skipping SAM header line: @SQ SN:847 LN:365180 skipping SAM header line: @SQ SN:848 LN:363582 skipping SAM header line: @SQ SN:849 LN:359726 skipping SAM header line: @SQ SN:850 LN:340455 skipping SAM header line: @SQ SN:851 LN:359384 skipping SAM header line: @SQ SN:852 LN:346847 skipping SAM header line: @SQ SN:853 LN:360137 skipping SAM header line: @SQ SN:854 LN:351529 skipping SAM header line: @SQ SN:855 LN:351165 skipping SAM header line: @SQ SN:856 LN:359992 skipping SAM header line: @SQ SN:857 LN:50536 skipping SAM header line: @SQ SN:858 LN:353816 skipping SAM header line: @SQ SN:859 LN:323622 skipping SAM header line: @SQ SN:860 LN:351148 skipping SAM header line: @SQ SN:861 LN:353826 skipping SAM header line: @SQ SN:862 LN:353823 skipping SAM header line: @SQ SN:863 LN:359048 skipping SAM header line: @SQ SN:864 LN:349439 skipping SAM header line: @SQ SN:865 LN:353667 skipping SAM header line: @SQ SN:866 LN:200483 skipping SAM header line: @SQ SN:867 LN:353045 skipping SAM header line: @SQ SN:868 LN:351198 skipping SAM header line: @SQ SN:869 LN:367555 skipping SAM header line: @SQ SN:870 LN:364726 skipping SAM header line: @SQ SN:871 LN:342655 skipping SAM header line: @SQ SN:872 LN:336991 skipping SAM header line: @SQ SN:873 LN:344588 skipping SAM header line: @SQ SN:874 LN:349750 skipping SAM header line: @SQ SN:875 LN:350262 skipping SAM header line: @SQ SN:876 LN:362711 skipping SAM header line: @SQ SN:877 LN:356104 skipping SAM header line: @SQ SN:878 LN:349885 skipping SAM header line: @SQ SN:879 LN:332424 skipping SAM header line: @SQ SN:880 LN:348545 skipping SAM header line: @SQ SN:881 LN:346872 skipping SAM header line: @SQ SN:882 LN:348631 skipping SAM header line: @SQ SN:883 LN:347554 skipping SAM header line: @SQ SN:884 LN:347194 skipping SAM header line: @SQ SN:885 LN:347300 skipping SAM header line: @SQ SN:886 LN:346765 skipping SAM header line: @SQ SN:887 LN:346457 skipping SAM header line: @SQ SN:888 LN:338405 skipping SAM header line: @SQ SN:889 LN:347374 skipping SAM header line: @SQ SN:890 LN:351688 skipping SAM header line: @SQ SN:891 LN:345243 skipping SAM header line: @SQ SN:892 LN:354364 skipping SAM header line: @SQ SN:893 LN:24229 skipping SAM header line: @SQ SN:894 LN:343006 skipping SAM header line: @SQ SN:895 LN:340302 skipping SAM header line: @SQ SN:896 LN:345059 skipping SAM header line: @SQ SN:897 LN:342604 skipping SAM header line: @SQ SN:898 LN:97592 skipping SAM header line: @SQ SN:899 LN:345128 skipping SAM header line: @SQ SN:900 LN:354769 skipping SAM header line: @SQ SN:901 LN:342845 skipping SAM header line: @SQ SN:902 LN:343617 skipping SAM header line: @SQ SN:903 LN:356715 skipping SAM header line: @SQ SN:904 LN:355647 skipping SAM header line: @SQ SN:905 LN:338320 skipping SAM header line: @SQ SN:906 LN:361461 skipping SAM header line: @SQ SN:907 LN:337907 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header line: @SQ SN:929 LN:330647 skipping SAM header line: @SQ SN:930 LN:329829 skipping SAM header line: @SQ SN:931 LN:251331 skipping SAM header line: @SQ SN:932 LN:326574 skipping SAM header line: @SQ SN:933 LN:329506 skipping SAM header line: @SQ SN:934 LN:62832 skipping SAM header line: @SQ SN:935 LN:329315 skipping SAM header line: @SQ SN:936 LN:327755 skipping SAM header line: @SQ SN:937 LN:292605 skipping SAM header line: @SQ SN:938 LN:334947 skipping SAM header line: @SQ SN:939 LN:363126 skipping SAM header line: @SQ SN:940 LN:323080 skipping SAM header line: @SQ SN:941 LN:326116 skipping SAM header line: @SQ SN:942 LN:325737 skipping SAM header line: @SQ SN:943 LN:330410 skipping SAM header line: @SQ SN:944 LN:328858 skipping SAM header line: @SQ SN:945 LN:327312 skipping SAM header line: @SQ SN:946 LN:325116 skipping SAM header line: @SQ SN:947 LN:324693 skipping SAM header line: @SQ SN:948 LN:351163 skipping SAM header line: @SQ SN:949 LN:322274 skipping SAM header line: 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LN:314579 skipping SAM header line: @SQ SN:972 LN:313870 skipping SAM header line: @SQ SN:973 LN:320639 skipping SAM header line: @SQ SN:974 LN:313507 skipping SAM header line: @SQ SN:975 LN:316393 skipping SAM header line: @SQ SN:976 LN:313205 skipping SAM header line: @SQ SN:977 LN:313020 skipping SAM header line: @SQ SN:978 LN:312640 skipping SAM header line: @SQ SN:979 LN:309438 skipping SAM header line: @SQ SN:980 LN:311274 skipping SAM header line: @SQ SN:981 LN:303111 skipping SAM header line: @SQ SN:982 LN:292525 skipping SAM header line: @SQ SN:983 LN:310705 skipping SAM header line: @SQ SN:984 LN:306074 skipping SAM header line: @SQ SN:985 LN:310456 skipping SAM header line: @SQ SN:986 LN:310003 skipping SAM header line: @SQ SN:987 LN:309835 skipping SAM header line: @SQ SN:988 LN:311076 skipping SAM header line: @SQ SN:989 LN:307346 skipping SAM header line: @SQ SN:990 LN:308103 skipping SAM header line: @SQ SN:991 LN:307662 skipping SAM header line: @SQ SN:992 LN:307867 skipping SAM header line: @SQ SN:993 LN:324000 skipping SAM header line: @SQ SN:994 LN:301234 skipping SAM header line: @SQ SN:995 LN:306685 skipping SAM header line: @SQ SN:996 LN:305566 skipping SAM header line: @SQ SN:997 LN:305092 skipping SAM header line: @SQ SN:998 LN:237765 skipping SAM header line: @SQ SN:999 LN:304471 skipping SAM header line: @SQ SN:1000 LN:304008 skipping SAM header line: @SQ SN:1001 LN:301285 skipping SAM header line: @SQ SN:1002 LN:300118 skipping SAM header line: @SQ SN:1003 LN:305518 skipping SAM header line: @SQ SN:1004 LN:293628 skipping SAM header line: @SQ SN:1005 LN:292917 skipping SAM header line: @SQ SN:1006 LN:303002 skipping SAM header line: @SQ SN:1007 LN:291493 skipping SAM header line: @SQ SN:1008 LN:300327 skipping SAM header line: @SQ SN:1009 LN:302837 skipping SAM header line: @SQ SN:1010 LN:301730 skipping SAM header line: @SQ SN:1011 LN:301326 skipping SAM header line: @SQ SN:1012 LN:310866 skipping SAM header line: @SQ SN:1013 LN:298465 skipping SAM header line: @SQ SN:1014 LN:294296 skipping SAM header line: @SQ SN:1015 LN:288226 skipping SAM header line: @SQ SN:1016 LN:306245 skipping SAM header line: @SQ SN:1017 LN:296654 skipping SAM header line: @SQ SN:1018 LN:294848 skipping SAM header line: @SQ SN:1019 LN:298657 skipping SAM header line: @SQ SN:1020 LN:300771 skipping SAM header line: @SQ SN:1021 LN:298285 skipping SAM header line: @SQ SN:1022 LN:298386 skipping SAM header line: @SQ SN:1023 LN:273548 skipping SAM header line: @SQ SN:1024 LN:255430 skipping SAM header line: @SQ SN:1025 LN:281074 skipping SAM header line: @SQ SN:1026 LN:295590 skipping SAM header line: @SQ SN:1027 LN:301494 skipping SAM header line: @SQ SN:1028 LN:293820 skipping SAM header line: @SQ SN:1029 LN:302112 skipping SAM header line: @SQ SN:1030 LN:290316 skipping SAM header line: @SQ SN:1031 LN:303714 skipping SAM header line: @SQ SN:1032 LN:294941 skipping SAM header line: @SQ SN:1033 LN:282812 skipping SAM header line: @SQ SN:1034 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line: @SQ SN:1076 LN:256401 skipping SAM header line: @SQ SN:1077 LN:284396 skipping SAM header line: @SQ SN:1078 LN:284413 skipping SAM header line: @SQ SN:1079 LN:284260 skipping SAM header line: @SQ SN:1080 LN:284152 skipping SAM header line: @SQ SN:1081 LN:287778 skipping SAM header line: @SQ SN:1082 LN:269027 skipping SAM header line: @SQ SN:1083 LN:289051 skipping SAM header line: @SQ SN:1084 LN:58854 skipping SAM header line: @SQ SN:1085 LN:282020 skipping SAM header line: @SQ SN:1086 LN:284260 skipping SAM header line: @SQ SN:1087 LN:280158 skipping SAM header line: @SQ SN:1088 LN:266130 skipping SAM header line: @SQ SN:1089 LN:279803 skipping SAM header line: @SQ SN:1090 LN:281627 skipping SAM header line: @SQ SN:1091 LN:279634 skipping SAM header line: @SQ SN:1092 LN:282320 skipping SAM header line: @SQ SN:1093 LN:272822 skipping SAM header line: @SQ SN:1094 LN:275629 skipping SAM header line: @SQ SN:1095 LN:277278 skipping SAM header line: @SQ SN:1096 LN:278671 skipping SAM header line: @SQ SN:1097 LN:278358 skipping SAM header line: @SQ SN:1098 LN:284107 skipping SAM header line: @SQ SN:1099 LN:122725 skipping SAM header line: @SQ SN:1100 LN:277818 skipping SAM header line: @SQ SN:1101 LN:259802 skipping SAM header line: @SQ SN:1102 LN:289764 skipping SAM header line: @SQ SN:1103 LN:284835 skipping SAM header line: @SQ SN:1104 LN:277169 skipping SAM header line: @SQ SN:1105 LN:277159 skipping SAM header line: @SQ SN:1106 LN:277272 skipping SAM header line: @SQ SN:1107 LN:276371 skipping SAM header line: @SQ SN:1108 LN:281210 skipping SAM header line: @SQ SN:1109 LN:276100 skipping SAM header line: @SQ SN:1110 LN:275668 skipping SAM header line: @SQ SN:1111 LN:275732 skipping SAM header line: @SQ SN:1112 LN:275822 skipping SAM header line: @SQ SN:1113 LN:274233 skipping SAM header line: @SQ SN:1114 LN:274995 skipping SAM header line: @SQ SN:1115 LN:270769 skipping SAM header line: @SQ SN:1116 LN:269163 skipping SAM header line: @SQ SN:1117 LN:274028 skipping SAM header line: @SQ SN:1118 LN:273787 skipping SAM header line: @SQ SN:1119 LN:273694 skipping SAM header line: @SQ SN:1120 LN:275974 skipping SAM header line: @SQ SN:1121 LN:208364 skipping SAM header line: @SQ SN:1122 LN:279973 skipping SAM header line: @SQ SN:1123 LN:259296 skipping SAM header line: @SQ SN:1124 LN:270835 skipping SAM header line: @SQ SN:1125 LN:253273 skipping SAM header line: @SQ SN:1126 LN:271404 skipping SAM header line: @SQ SN:1127 LN:87856 skipping SAM header line: @SQ SN:1128 LN:281497 skipping SAM header line: @SQ SN:1129 LN:263475 skipping SAM header line: @SQ SN:1130 LN:270688 skipping SAM header line: @SQ SN:1131 LN:270258 skipping SAM header line: @SQ SN:1132 LN:269965 skipping SAM header line: @SQ SN:1133 LN:270294 skipping SAM header line: @SQ SN:1134 LN:270153 skipping SAM header line: @SQ SN:1135 LN:339527 skipping SAM header line: @SQ SN:1136 LN:268610 skipping SAM header line: @SQ SN:1137 LN:269459 skipping SAM header line: @SQ SN:1138 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line: @SQ SN:1180 LN:250277 skipping SAM header line: @SQ SN:1181 LN:249222 skipping SAM header line: @SQ SN:1182 LN:226034 skipping SAM header line: @SQ SN:1183 LN:250194 skipping SAM header line: @SQ SN:1184 LN:89849 skipping SAM header line: @SQ SN:1185 LN:244461 skipping SAM header line: @SQ SN:1186 LN:249134 skipping SAM header line: @SQ SN:1187 LN:246355 skipping SAM header line: @SQ SN:1188 LN:237275 skipping SAM header line: @SQ SN:1189 LN:244103 skipping SAM header line: @SQ SN:1190 LN:243243 skipping SAM header line: @SQ SN:1191 LN:259006 skipping SAM header line: @SQ SN:1192 LN:247589 skipping SAM header line: @SQ SN:1193 LN:247870 skipping SAM header line: @SQ SN:1194 LN:247608 skipping SAM header line: @SQ SN:1195 LN:245812 skipping SAM header line: @SQ SN:1196 LN:246795 skipping SAM header line: @SQ SN:1197 LN:238806 skipping SAM header line: @SQ SN:1198 LN:249788 skipping SAM header line: @SQ SN:1199 LN:245639 skipping SAM header line: @SQ SN:1200 LN:227761 skipping SAM header line: @SQ SN:1201 LN:258942 skipping SAM header line: @SQ SN:1202 LN:245894 skipping SAM header line: @SQ SN:1203 LN:244832 skipping SAM header line: @SQ SN:1204 LN:249594 skipping SAM header line: @SQ SN:1205 LN:249635 skipping SAM header line: @SQ SN:1206 LN:207324 skipping SAM header line: @SQ SN:1207 LN:242447 skipping SAM header line: @SQ SN:1208 LN:244412 skipping SAM header line: @SQ SN:1209 LN:244226 skipping SAM header line: @SQ SN:1210 LN:244216 skipping SAM header line: @SQ SN:1211 LN:239629 skipping SAM header line: @SQ SN:1212 LN:244651 skipping SAM header line: @SQ SN:1213 LN:243815 skipping SAM header line: @SQ SN:1214 LN:243359 skipping SAM header line: @SQ SN:1215 LN:238664 skipping SAM header line: @SQ SN:1216 LN:243507 skipping SAM header line: @SQ SN:1217 LN:242809 skipping SAM header line: @SQ SN:1218 LN:238104 skipping SAM header line: @SQ SN:1219 LN:242556 skipping SAM header line: @SQ SN:1220 LN:241073 skipping SAM header line: @SQ SN:1221 LN:241080 skipping SAM header line: @SQ SN:1222 LN:240715 skipping SAM header line: @SQ SN:1223 LN:239944 skipping SAM header line: @SQ SN:1224 LN:239727 skipping SAM header line: @SQ SN:1225 LN:239609 skipping SAM header line: @SQ SN:1226 LN:240687 skipping SAM header line: @SQ SN:1227 LN:248535 skipping SAM header line: @SQ SN:1228 LN:239305 skipping SAM header line: @SQ SN:1229 LN:230757 skipping SAM header line: @SQ SN:1230 LN:230781 skipping SAM header line: @SQ SN:1231 LN:249113 skipping SAM header line: @SQ SN:1232 LN:226328 skipping SAM header line: @SQ SN:1233 LN:233084 skipping SAM header line: @SQ SN:1234 LN:237290 skipping SAM header line: @SQ SN:1235 LN:237493 skipping SAM header line: @SQ SN:1236 LN:229724 skipping SAM header line: @SQ SN:1237 LN:236229 skipping SAM header line: @SQ SN:1238 LN:236146 skipping SAM header line: @SQ SN:1239 LN:237731 skipping SAM header line: @SQ SN:1240 LN:241672 skipping SAM header line: @SQ SN:1241 LN:232445 skipping SAM header line: @SQ SN:1242 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line: @SQ SN:1284 LN:222312 skipping SAM header line: @SQ SN:1285 LN:222290 skipping SAM header line: @SQ SN:1286 LN:222330 skipping SAM header line: @SQ SN:1287 LN:221838 skipping SAM header line: @SQ SN:1288 LN:220876 skipping SAM header line: @SQ SN:1289 LN:220365 skipping SAM header line: @SQ SN:1290 LN:206787 skipping SAM header line: @SQ SN:1291 LN:220099 skipping SAM header line: @SQ SN:1292 LN:219750 skipping SAM header line: @SQ SN:1293 LN:219760 skipping SAM header line: @SQ SN:1294 LN:219466 skipping SAM header line: @SQ SN:1295 LN:219382 skipping SAM header line: @SQ SN:1296 LN:215092 skipping SAM header line: @SQ SN:1297 LN:216838 skipping SAM header line: @SQ SN:1298 LN:218543 skipping SAM header line: @SQ SN:1299 LN:212611 skipping SAM header line: @SQ SN:1300 LN:217951 skipping SAM header line: @SQ SN:1301 LN:217462 skipping SAM header line: @SQ SN:1302 LN:217925 skipping SAM header line: @SQ SN:1303 LN:217463 skipping SAM header line: @SQ SN:1304 LN:210190 skipping SAM header line: @SQ SN:1305 LN:212373 skipping SAM header line: @SQ SN:1306 LN:221073 skipping SAM header line: @SQ SN:1307 LN:214977 skipping SAM header line: @SQ SN:1308 LN:216126 skipping SAM header line: @SQ SN:1309 LN:215912 skipping SAM header line: @SQ SN:1310 LN:215931 skipping SAM header line: @SQ SN:1311 LN:209675 skipping SAM header line: @SQ SN:1312 LN:211880 skipping SAM header line: @SQ SN:1313 LN:214111 skipping SAM header line: @SQ SN:1314 LN:137261 skipping SAM header line: @SQ SN:1315 LN:214793 skipping SAM header line: @SQ SN:1316 LN:214403 skipping SAM header line: @SQ SN:1317 LN:136614 skipping SAM header line: @SQ SN:1318 LN:214485 skipping SAM header line: @SQ SN:1319 LN:213643 skipping SAM header line: @SQ SN:1320 LN:213370 skipping SAM header line: @SQ SN:1321 LN:213205 skipping SAM header line: @SQ SN:1322 LN:213610 skipping SAM header line: @SQ SN:1323 LN:190045 skipping SAM header line: @SQ SN:1324 LN:215809 skipping SAM header line: @SQ SN:1325 LN:212943 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skipping SAM header line: @SQ SN:1950 LN:107434 skipping SAM header line: @SQ SN:1951 LN:109332 skipping SAM header line: @SQ SN:1952 LN:109046 skipping SAM header line: @SQ SN:1953 LN:105147 skipping SAM header line: @SQ SN:1954 LN:108585 skipping SAM header line: @SQ SN:1955 LN:108589 skipping SAM header line: @SQ SN:1956 LN:108237 skipping SAM header line: @SQ SN:1957 LN:108255 skipping SAM header line: @SQ SN:1958 LN:94221 skipping SAM header line: @SQ SN:1959 LN:107760 skipping SAM header line: @SQ SN:1960 LN:107770 skipping SAM header line: @SQ SN:1961 LN:72473 skipping SAM header line: @SQ SN:1962 LN:107737 skipping SAM header line: @SQ SN:1963 LN:107637 skipping SAM header line: @SQ SN:1964 LN:107514 skipping SAM header line: @SQ SN:1965 LN:107577 skipping SAM header line: @SQ SN:1966 LN:107343 skipping SAM header line: @SQ SN:1967 LN:107240 skipping SAM header line: @SQ SN:1968 LN:107171 skipping SAM header line: @SQ SN:1969 LN:107244 skipping SAM header line: @SQ SN:1970 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line: @SQ SN:2012 LN:101749 skipping SAM header line: @SQ SN:2013 LN:101706 skipping SAM header line: @SQ SN:2014 LN:101561 skipping SAM header line: @SQ SN:2015 LN:101342 skipping SAM header line: @SQ SN:2016 LN:101336 skipping SAM header line: @SQ SN:2017 LN:101173 skipping SAM header line: @SQ SN:2018 LN:101223 skipping SAM header line: @SQ SN:2019 LN:100684 skipping SAM header line: @SQ SN:2020 LN:91334 skipping SAM header line: @SQ SN:2021 LN:100682 skipping SAM header line: @SQ SN:2022 LN:100541 skipping SAM header line: @SQ SN:2023 LN:100636 skipping SAM header line: @SQ SN:2024 LN:100324 skipping SAM header line: @SQ SN:2025 LN:100075 skipping SAM header line: @SQ SN:2026 LN:100242 skipping SAM header line: @SQ SN:2027 LN:100180 skipping SAM header line: @SQ SN:2028 LN:100026 skipping SAM header line: @SQ SN:2029 LN:100109 skipping SAM header line: @SQ SN:2030 LN:93285 skipping SAM header line: @SQ SN:2031 LN:100030 skipping SAM header line: @SQ SN:2032 LN:99985 skipping SAM 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@SQ SN:2309 LN:74323 skipping SAM header line: @SQ SN:2310 LN:74982 skipping SAM header line: @SQ SN:2311 LN:74353 skipping SAM header line: @SQ SN:2312 LN:74691 skipping SAM header line: @SQ SN:2313 LN:74675 skipping SAM header line: @SQ SN:2314 LN:74492 skipping SAM header line: @SQ SN:2315 LN:50290 skipping SAM header line: @SQ SN:2316 LN:74011 skipping SAM header line: @SQ SN:2317 LN:73882 skipping SAM header line: @SQ SN:2318 LN:75193 skipping SAM header line: @SQ SN:2319 LN:73805 skipping SAM header line: @SQ SN:2320 LN:73769 skipping SAM header line: @SQ SN:2321 LN:73753 skipping SAM header line: @SQ SN:2322 LN:73662 skipping SAM header line: @SQ SN:2323 LN:74196 skipping SAM header line: @SQ SN:2324 LN:73551 skipping SAM header line: @SQ SN:2325 LN:73591 skipping SAM header line: @SQ SN:2326 LN:73488 skipping SAM header line: @SQ SN:2327 LN:73490 skipping SAM header line: @SQ SN:2328 LN:73369 skipping SAM header line: @SQ SN:2329 LN:73213 skipping SAM header line: @SQ SN:2330 LN:73239 skipping SAM header line: @SQ SN:2331 LN:73044 skipping SAM header line: @SQ SN:2332 LN:72888 skipping SAM header line: @SQ SN:2333 LN:72835 skipping SAM header line: @SQ SN:2334 LN:73814 skipping SAM header line: @SQ SN:2335 LN:72803 skipping SAM header line: @SQ SN:2336 LN:72735 skipping SAM header line: @SQ SN:2337 LN:72548 skipping SAM header line: @SQ SN:2338 LN:72609 skipping SAM header line: @SQ SN:2339 LN:72639 skipping SAM header line: @SQ SN:2340 LN:72328 skipping SAM header line: @SQ SN:2341 LN:72089 skipping SAM header line: @SQ SN:2342 LN:72451 skipping SAM header line: @SQ SN:2343 LN:72309 skipping SAM header line: @SQ SN:2344 LN:72163 skipping SAM header line: @SQ SN:2345 LN:72087 skipping SAM header line: @SQ SN:2346 LN:71982 skipping SAM header line: @SQ SN:2347 LN:63031 skipping SAM header line: @SQ SN:2348 LN:71841 skipping SAM header line: @SQ SN:2349 LN:71745 skipping SAM header line: @SQ SN:2350 LN:71566 skipping SAM header line: @SQ SN:2351 LN:71677 skipping SAM header line: @SQ SN:2352 LN:71514 skipping SAM header line: @SQ SN:2353 LN:71418 skipping SAM header line: @SQ SN:2354 LN:71192 skipping SAM header line: @SQ SN:2355 LN:51418 skipping SAM header line: @SQ SN:2356 LN:71201 skipping SAM header line: @SQ SN:2357 LN:71145 skipping SAM header line: @SQ SN:2358 LN:70977 skipping SAM header line: @SQ SN:2359 LN:70908 skipping SAM header line: @SQ SN:2360 LN:70900 skipping SAM header line: @SQ SN:2361 LN:70675 skipping SAM header line: @SQ SN:2362 LN:70782 skipping SAM header line: @SQ SN:2363 LN:70767 skipping SAM header line: @SQ SN:2364 LN:73923 skipping SAM header line: @SQ SN:2365 LN:70381 skipping SAM header line: @SQ SN:2366 LN:70331 skipping SAM header line: @SQ SN:2367 LN:70113 skipping SAM header line: @SQ SN:2368 LN:70190 skipping SAM header line: @SQ SN:2369 LN:60170 skipping SAM header line: @SQ SN:2370 LN:69961 skipping SAM header line: @SQ SN:2371 LN:69943 skipping SAM header line: @SQ SN:2372 LN:69904 skipping SAM header line: @SQ SN:2373 LN:72714 skipping SAM header line: @SQ SN:2374 LN:51000 skipping SAM header line: @SQ SN:2375 LN:69928 skipping SAM header line: @SQ SN:2376 LN:69875 skipping SAM header line: @SQ SN:2377 LN:69864 skipping SAM header line: @SQ SN:2378 LN:69279 skipping SAM header line: @SQ SN:2379 LN:74065 skipping SAM header line: @SQ SN:2380 LN:69016 skipping SAM header line: @SQ SN:2381 LN:69052 skipping SAM header line: @SQ SN:2382 LN:68824 skipping SAM header line: @SQ SN:2383 LN:68944 skipping SAM header line: @SQ SN:2384 LN:68807 skipping SAM header line: @SQ SN:2385 LN:68778 skipping SAM header line: @SQ SN:2386 LN:68715 skipping SAM header line: @SQ SN:2387 LN:68753 skipping SAM header line: @SQ SN:2388 LN:68277 skipping SAM header line: @SQ SN:2389 LN:68411 skipping SAM header line: @SQ SN:2390 LN:68286 skipping SAM header line: @SQ SN:2391 LN:68313 skipping SAM header line: @SQ SN:2392 LN:68191 skipping SAM header line: @SQ SN:2393 LN:68142 skipping SAM header line: @SQ SN:2394 LN:68090 skipping SAM header line: @SQ SN:2395 LN:67843 skipping SAM header line: @SQ SN:2396 LN:67686 skipping SAM header line: @SQ SN:2397 LN:67503 skipping SAM header line: @SQ SN:2398 LN:67377 skipping SAM header line: @SQ SN:2399 LN:69652 skipping SAM header line: @SQ SN:2400 LN:67382 skipping SAM header line: @SQ SN:2401 LN:67227 skipping SAM header line: @SQ SN:2402 LN:67086 skipping SAM header line: @SQ SN:2403 LN:63474 skipping SAM header line: @SQ SN:2404 LN:66914 skipping SAM header line: @SQ SN:2405 LN:66873 skipping SAM header line: @SQ SN:2406 LN:66706 skipping SAM header line: @SQ SN:2407 LN:66661 skipping SAM header line: @SQ SN:2408 LN:66760 skipping SAM header line: @SQ SN:2409 LN:66509 skipping SAM header line: @SQ SN:2410 LN:66625 skipping SAM header line: @SQ SN:2411 LN:66645 skipping SAM header line: @SQ SN:2412 LN:62202 skipping SAM header line: @SQ SN:2413 LN:66442 skipping SAM header line: @SQ SN:2414 LN:65054 skipping SAM header line: @SQ SN:2415 LN:66437 skipping SAM header line: @SQ SN:2416 LN:66333 skipping SAM header line: @SQ SN:2417 LN:66134 skipping SAM header line: @SQ SN:2418 LN:46032 skipping SAM header line: @SQ SN:2419 LN:60888 skipping SAM header line: @SQ SN:2420 LN:67039 skipping SAM header line: @SQ SN:2421 LN:65507 skipping SAM header line: @SQ SN:2422 LN:65609 skipping SAM header line: @SQ SN:2423 LN:65455 skipping SAM header line: @SQ SN:2424 LN:63410 skipping SAM header line: @SQ SN:2425 LN:65452 skipping SAM header line: @SQ SN:2426 LN:65430 skipping SAM header line: @SQ SN:2427 LN:65196 skipping SAM header line: @SQ SN:2428 LN:65134 skipping SAM header line: @SQ SN:2429 LN:72116 skipping SAM header line: @SQ SN:2430 LN:64991 skipping SAM header line: @SQ SN:2431 LN:60442 skipping SAM header line: @SQ SN:2432 LN:65320 skipping SAM header line: @SQ SN:2433 LN:64820 skipping SAM header line: @SQ SN:2434 LN:64741 skipping SAM header line: @SQ SN:2435 LN:64578 skipping SAM header line: @SQ SN:2436 LN:64504 skipping SAM header line: @SQ SN:2437 LN:64524 skipping SAM header line: @SQ SN:2438 LN:35475 skipping SAM header line: @SQ SN:2439 LN:64140 skipping SAM header line: @SQ SN:2440 LN:63948 skipping SAM header line: @SQ SN:2441 LN:63161 skipping SAM header line: @SQ SN:2442 LN:63133 skipping SAM header line: @SQ SN:2443 LN:63012 skipping SAM header line: @SQ SN:2444 LN:62987 skipping SAM header line: @SQ SN:2445 LN:62913 skipping SAM header line: @SQ SN:2446 LN:62886 skipping SAM header line: @SQ SN:2447 LN:62732 skipping SAM header line: @SQ SN:2448 LN:62499 skipping SAM header line: @SQ SN:2449 LN:63847 skipping SAM header line: @SQ SN:2450 LN:63591 skipping SAM header line: @SQ SN:2451 LN:63586 skipping SAM header line: @SQ SN:2452 LN:63404 skipping SAM header line: @SQ SN:2453 LN:60537 skipping SAM header line: @SQ SN:2454 LN:63282 skipping SAM header line: @SQ SN:2455 LN:63224 skipping SAM header line: @SQ SN:2456 LN:63253 skipping SAM header line: @SQ SN:2457 LN:62472 skipping SAM header line: @SQ SN:2458 LN:62579 skipping SAM header line: @SQ SN:2459 LN:62232 skipping SAM header line: @SQ SN:2460 LN:62044 skipping SAM header line: @SQ SN:2461 LN:61835 skipping SAM header line: @SQ SN:2462 LN:62668 skipping SAM header line: @SQ SN:2463 LN:61805 skipping SAM header line: @SQ SN:2464 LN:61797 skipping SAM header line: @SQ SN:2465 LN:61717 skipping SAM header line: @SQ SN:2466 LN:61638 skipping SAM header line: @SQ SN:2467 LN:61777 skipping SAM header line: @SQ SN:2468 LN:61687 skipping SAM header line: @SQ SN:2469 LN:61605 skipping SAM header line: @SQ SN:2470 LN:61590 skipping SAM header line: @SQ SN:2471 LN:28960 skipping SAM header line: @SQ SN:2472 LN:61599 skipping SAM header line: @SQ SN:2473 LN:47108 skipping SAM header line: @SQ SN:2474 LN:61295 skipping SAM header line: @SQ SN:2475 LN:61249 skipping SAM header line: @SQ SN:2476 LN:61193 skipping SAM header line: @SQ SN:2477 LN:61411 skipping SAM header line: @SQ SN:2478 LN:61298 skipping SAM header line: @SQ SN:2479 LN:61848 skipping SAM header line: @SQ SN:2480 LN:61084 skipping SAM header line: @SQ SN:2481 LN:61128 skipping SAM header line: @SQ SN:2482 LN:60706 skipping SAM header line: @SQ SN:2483 LN:59495 skipping SAM header line: @SQ SN:2484 LN:60597 skipping SAM header line: @SQ SN:2485 LN:60583 skipping SAM header line: @SQ SN:2486 LN:60368 skipping SAM header line: @SQ SN:2487 LN:60399 skipping SAM header line: @SQ SN:2488 LN:62056 skipping SAM header line: @SQ SN:2489 LN:56950 skipping SAM header line: @SQ SN:2490 LN:60011 skipping SAM header line: @SQ SN:2491 LN:59962 skipping SAM header line: @SQ SN:2492 LN:59882 skipping SAM header line: @SQ SN:2493 LN:59253 skipping SAM header line: @SQ SN:2494 LN:59252 skipping SAM header line: @SQ SN:2495 LN:59219 skipping SAM header line: @SQ SN:2496 LN:58999 skipping SAM header line: @SQ SN:2497 LN:58997 skipping SAM header line: @SQ SN:2498 LN:58752 skipping SAM header line: @SQ SN:2499 LN:58758 skipping SAM header line: @SQ SN:2500 LN:58628 skipping SAM header line: @SQ SN:2501 LN:58602 skipping SAM header line: @SQ SN:2502 LN:58402 skipping SAM header line: @SQ SN:2503 LN:58186 skipping SAM header line: @SQ SN:2504 LN:58405 skipping SAM header line: @SQ SN:2505 LN:58107 skipping SAM header line: @SQ SN:2506 LN:57879 skipping SAM header line: @SQ SN:2507 LN:40414 skipping SAM header line: @SQ SN:2508 LN:57893 skipping SAM header line: @SQ SN:2509 LN:43660 skipping SAM header line: @SQ SN:2510 LN:55003 skipping SAM header line: @SQ SN:2511 LN:57791 skipping SAM header line: @SQ SN:2512 LN:57696 skipping SAM header line: @SQ SN:2513 LN:57587 skipping SAM header line: @SQ SN:2514 LN:57337 skipping SAM header line: @SQ SN:2515 LN:57213 skipping SAM header line: @SQ SN:2516 LN:57247 skipping SAM header line: @SQ SN:2517 LN:57178 skipping SAM header line: @SQ SN:2518 LN:57145 skipping SAM header line: @SQ SN:2519 LN:57168 skipping SAM header line: @SQ SN:2520 LN:57157 skipping SAM header line: @SQ SN:2521 LN:56997 skipping SAM header line: @SQ SN:2522 LN:56822 skipping SAM header line: @SQ SN:2523 LN:56732 skipping SAM header line: @SQ SN:2524 LN:56698 skipping SAM header line: @SQ SN:2525 LN:56638 skipping SAM header line: @SQ SN:2526 LN:56527 skipping SAM header line: @SQ SN:2527 LN:56505 skipping SAM header line: @SQ SN:2528 LN:56456 skipping SAM header line: @SQ SN:2529 LN:56347 skipping SAM header line: @SQ SN:2530 LN:56324 skipping SAM header line: @SQ SN:2531 LN:56231 skipping SAM header line: @SQ SN:2532 LN:56002 skipping SAM header line: @SQ SN:2533 LN:56066 skipping SAM header line: @SQ SN:2534 LN:56317 skipping SAM header line: @SQ SN:2535 LN:55885 skipping SAM header line: @SQ SN:2536 LN:45049 skipping SAM header line: @SQ SN:2537 LN:55791 skipping SAM header line: @SQ SN:2538 LN:56237 skipping SAM header line: @SQ SN:2539 LN:55598 skipping SAM header line: @SQ SN:2540 LN:55559 skipping SAM header line: @SQ SN:2541 LN:55525 skipping SAM header line: @SQ SN:2542 LN:52189 skipping SAM header line: @SQ SN:2543 LN:55486 skipping SAM header line: @SQ SN:2544 LN:55312 skipping SAM header line: @SQ SN:2545 LN:55384 skipping SAM header line: @SQ SN:2546 LN:55349 skipping SAM header line: @SQ SN:2547 LN:55186 skipping SAM header line: @SQ SN:2548 LN:55163 skipping SAM header line: @SQ SN:2549 LN:55129 skipping SAM header line: @SQ SN:2550 LN:55032 skipping SAM header line: @SQ SN:2551 LN:55074 skipping SAM header line: @SQ SN:2552 LN:55076 skipping SAM header line: @SQ SN:2553 LN:55091 skipping SAM header line: @SQ SN:2554 LN:54753 skipping SAM header line: @SQ SN:2555 LN:54671 skipping SAM header line: @SQ SN:2556 LN:54564 skipping SAM header line: @SQ SN:2557 LN:54475 skipping SAM header line: @SQ SN:2558 LN:54482 skipping SAM header line: @SQ SN:2559 LN:54554 skipping SAM header line: @SQ SN:2560 LN:54487 skipping SAM header line: @SQ SN:2561 LN:54494 skipping SAM header line: @SQ SN:2562 LN:54177 skipping SAM header line: @SQ SN:2563 LN:53804 skipping SAM header line: @SQ SN:2564 LN:53713 skipping SAM header line: @SQ SN:2565 LN:53419 skipping SAM header line: @SQ SN:2566 LN:53361 skipping SAM header line: @SQ SN:2567 LN:53262 skipping SAM header line: @SQ SN:2568 LN:53091 skipping SAM header line: @SQ SN:2569 LN:53047 skipping SAM header line: @SQ SN:2570 LN:53096 skipping SAM header line: @SQ SN:2571 LN:52905 skipping SAM header line: @SQ SN:2572 LN:52850 skipping SAM header line: @SQ SN:2573 LN:52888 skipping SAM header line: @SQ SN:2574 LN:52856 skipping SAM header line: @SQ SN:2575 LN:52629 skipping SAM header line: @SQ SN:2576 LN:52679 skipping SAM header line: @SQ SN:2577 LN:52580 skipping SAM header line: @SQ SN:2578 LN:52538 skipping SAM header line: @SQ SN:2579 LN:52440 skipping SAM header line: @SQ SN:2580 LN:52081 skipping SAM header line: @SQ SN:2581 LN:52024 skipping SAM header line: @SQ SN:2582 LN:51983 skipping SAM header line: @SQ SN:2583 LN:51881 skipping SAM header line: @SQ SN:2584 LN:51837 skipping SAM header line: @SQ SN:2585 LN:51927 skipping SAM header line: @SQ SN:2586 LN:51733 skipping SAM header line: @SQ SN:2587 LN:51794 skipping SAM header line: @SQ SN:2588 LN:51859 skipping SAM header line: @SQ SN:2589 LN:51243 skipping SAM header line: @SQ SN:2590 LN:51256 skipping SAM header line: @SQ SN:2591 LN:51279 skipping SAM header line: @SQ SN:2592 LN:64458 skipping SAM header line: @SQ SN:2593 LN:50849 skipping SAM header line: @SQ SN:2594 LN:50760 skipping SAM header line: @SQ SN:2595 LN:50806 skipping SAM header line: @SQ SN:2596 LN:51001 skipping SAM header line: @SQ SN:2597 LN:50563 skipping SAM header line: @SQ SN:2598 LN:50519 skipping SAM header line: @SQ SN:2599 LN:50416 skipping SAM header line: @SQ SN:2600 LN:50374 skipping SAM header line: @SQ SN:2601 LN:50290 skipping SAM header line: @SQ SN:2602 LN:50140 skipping SAM header line: @SQ SN:2603 LN:50173 skipping SAM header line: @SQ SN:2604 LN:35079 skipping SAM header line: @SQ SN:2605 LN:49651 skipping SAM header line: @SQ SN:2606 LN:49726 skipping SAM header line: @SQ SN:2607 LN:46404 skipping SAM header line: @SQ SN:2608 LN:55803 skipping SAM header line: @SQ SN:2609 LN:49558 skipping SAM header line: @SQ SN:2610 LN:49299 skipping SAM header line: @SQ SN:2611 LN:48994 skipping SAM header line: @SQ SN:2612 LN:48865 skipping SAM header line: @SQ SN:2613 LN:28643 skipping SAM header line: @SQ SN:2614 LN:48795 skipping SAM header line: @SQ SN:2615 LN:48658 skipping SAM header line: @SQ SN:2616 LN:48605 skipping SAM header line: @SQ SN:2617 LN:48564 skipping SAM header line: @SQ SN:2618 LN:48445 skipping SAM header line: @SQ SN:2619 LN:20839 skipping SAM header line: @SQ SN:2620 LN:48310 skipping SAM header line: @SQ SN:2621 LN:48235 skipping SAM header line: @SQ SN:2622 LN:48302 skipping SAM header line: @SQ SN:2623 LN:48222 skipping SAM header line: @SQ SN:2624 LN:48137 skipping SAM header line: @SQ SN:2625 LN:48114 skipping SAM header line: @SQ SN:2626 LN:48204 skipping SAM header line: @SQ SN:2627 LN:48083 skipping SAM header line: @SQ SN:2628 LN:47995 skipping SAM header line: @SQ SN:2629 LN:48056 skipping SAM header line: @SQ SN:2630 LN:47856 skipping SAM header line: @SQ SN:2631 LN:47977 skipping SAM header line: @SQ SN:2632 LN:29214 skipping SAM header line: @SQ SN:2633 LN:47735 skipping SAM header line: @SQ SN:2634 LN:47688 skipping SAM header line: @SQ SN:2635 LN:47602 skipping SAM header line: @SQ SN:2636 LN:47260 skipping SAM header line: @SQ SN:2637 LN:47128 skipping SAM header line: @SQ SN:2638 LN:46443 skipping SAM header line: @SQ SN:2639 LN:46937 skipping SAM header line: @SQ SN:2640 LN:46910 skipping SAM header line: @SQ SN:2641 LN:47107 skipping SAM header line: @SQ SN:2642 LN:46814 skipping SAM header line: @SQ SN:2643 LN:46873 skipping SAM header line: @SQ SN:2644 LN:46781 skipping SAM header line: @SQ SN:2645 LN:46567 skipping SAM header line: @SQ SN:2646 LN:45761 skipping SAM header line: @SQ SN:2647 LN:46105 skipping SAM header line: @SQ SN:2648 LN:50398 skipping SAM header line: @SQ SN:2649 LN:36369 skipping SAM header line: @SQ SN:2650 LN:22154 skipping SAM header line: @SQ SN:2651 LN:45583 skipping SAM header line: @SQ SN:2652 LN:45656 skipping SAM header line: @SQ SN:2653 LN:45551 skipping SAM header line: @SQ SN:2654 LN:45560 skipping SAM header line: @SQ SN:2655 LN:45557 skipping SAM header line: @SQ SN:2656 LN:45544 skipping SAM header line: @SQ SN:2657 LN:45566 skipping SAM header line: @SQ SN:2658 LN:45480 skipping SAM header line: @SQ SN:2659 LN:45186 skipping SAM header line: @SQ SN:2660 LN:44986 skipping SAM header line: @SQ SN:2661 LN:45117 skipping SAM header line: @SQ SN:2662 LN:44383 skipping SAM header line: @SQ SN:2663 LN:44319 skipping SAM header line: @SQ SN:2664 LN:44208 skipping SAM header line: @SQ SN:2665 LN:44136 skipping SAM header line: @SQ SN:2666 LN:44157 skipping SAM header line: @SQ SN:2667 LN:44272 skipping SAM header line: @SQ SN:2668 LN:43993 skipping SAM header line: @SQ SN:2669 LN:43822 skipping SAM header line: @SQ SN:2670 LN:43019 skipping SAM header line: @SQ SN:2671 LN:43763 skipping SAM header line: @SQ SN:2672 LN:43664 skipping SAM header line: @SQ SN:2673 LN:43312 skipping SAM header line: @SQ SN:2674 LN:43143 skipping SAM header line: @SQ SN:2675 LN:43262 skipping SAM header line: @SQ SN:2676 LN:42115 skipping SAM header line: @SQ SN:2677 LN:42699 skipping SAM header line: @SQ SN:2678 LN:42310 skipping SAM header line: @SQ SN:2679 LN:42434 skipping SAM header line: @SQ SN:2680 LN:42282 skipping SAM header line: @SQ SN:2681 LN:42143 skipping SAM header line: @SQ SN:2682 LN:42212 skipping SAM header line: @SQ SN:2683 LN:42102 skipping SAM header line: @SQ SN:2684 LN:41575 skipping SAM header line: @SQ SN:2685 LN:42072 skipping SAM header line: @SQ SN:2686 LN:41890 skipping SAM header line: @SQ SN:2687 LN:41612 skipping SAM header line: @SQ SN:2688 LN:41701 skipping SAM header line: @SQ SN:2689 LN:41743 skipping SAM header line: @SQ SN:2690 LN:41445 skipping SAM header line: @SQ SN:2691 LN:40977 skipping SAM header line: @SQ SN:2692 LN:40970 skipping SAM header line: @SQ SN:2693 LN:40788 skipping SAM header line: @SQ SN:2694 LN:40859 skipping SAM header line: @SQ SN:2695 LN:36056 skipping SAM header line: @SQ SN:2696 LN:41310 skipping SAM header line: @SQ SN:2697 LN:40757 skipping SAM header line: @SQ SN:2698 LN:40786 skipping SAM header line: @SQ SN:2699 LN:40693 skipping SAM header line: @SQ SN:2700 LN:40651 skipping SAM header line: @SQ SN:2701 LN:40341 skipping SAM header line: @SQ SN:2702 LN:34145 skipping SAM header line: @SQ SN:2703 LN:40252 skipping SAM header line: @SQ SN:2704 LN:40108 skipping SAM header line: @SQ SN:2705 LN:40076 skipping SAM header line: @SQ SN:2706 LN:42313 skipping SAM header line: @SQ SN:2707 LN:39949 skipping SAM header line: @SQ SN:2708 LN:22042 skipping SAM header line: @SQ SN:2709 LN:40066 skipping SAM header line: @SQ SN:2710 LN:39947 skipping SAM header line: @SQ SN:2711 LN:39822 skipping SAM header line: @SQ SN:2712 LN:39678 skipping SAM header line: @SQ SN:2713 LN:39685 skipping SAM header line: @SQ SN:2714 LN:39687 skipping SAM header line: @SQ SN:2715 LN:40113 skipping SAM header line: @SQ SN:2716 LN:39646 skipping SAM header line: @SQ SN:2717 LN:39568 skipping SAM header line: @SQ SN:2718 LN:39516 skipping SAM header line: @SQ SN:2719 LN:39573 skipping SAM header line: @SQ SN:2720 LN:39459 skipping SAM header line: @SQ SN:2721 LN:39299 skipping SAM header line: @SQ SN:2722 LN:39321 skipping SAM header line: @SQ SN:2723 LN:39247 skipping SAM header line: @SQ SN:2724 LN:39096 skipping SAM header line: @SQ SN:2725 LN:39259 skipping SAM header line: @SQ SN:2726 LN:33908 skipping SAM header line: @SQ SN:2727 LN:38739 skipping SAM header line: @SQ SN:2728 LN:38553 skipping SAM header line: @SQ SN:2729 LN:38767 skipping SAM header line: @SQ SN:2730 LN:38405 skipping SAM header line: @SQ SN:2731 LN:38624 skipping SAM header line: @SQ SN:2732 LN:38630 skipping SAM header line: @SQ SN:2733 LN:38409 skipping SAM header line: @SQ SN:2734 LN:38484 skipping SAM header line: @SQ SN:2735 LN:39368 skipping SAM header line: @SQ SN:2736 LN:38337 skipping SAM header line: @SQ SN:2737 LN:38241 skipping SAM header line: @SQ SN:2738 LN:38063 skipping SAM header line: @SQ SN:2739 LN:37935 skipping SAM header line: @SQ SN:2740 LN:37937 skipping SAM header line: @SQ SN:2741 LN:37931 skipping SAM header line: @SQ SN:2742 LN:37884 skipping SAM header line: @SQ SN:2743 LN:37767 skipping SAM header line: @SQ SN:2744 LN:37759 skipping SAM header line: @SQ SN:2745 LN:37629 skipping SAM header line: @SQ SN:2746 LN:37520 skipping SAM header line: @SQ SN:2747 LN:37435 skipping SAM header line: @SQ SN:2748 LN:37302 skipping SAM header line: @SQ SN:2749 LN:37274 skipping SAM header line: @SQ SN:2750 LN:37353 skipping SAM header line: @SQ SN:2751 LN:28772 skipping SAM header line: @SQ SN:2752 LN:37190 skipping SAM header line: @SQ SN:2753 LN:36574 skipping SAM header line: @SQ SN:2754 LN:37017 skipping SAM header line: @SQ SN:2755 LN:37166 skipping SAM header line: @SQ SN:2756 LN:37129 skipping SAM header line: @SQ SN:2757 LN:37086 skipping SAM header line: @SQ SN:2758 LN:36981 skipping SAM header line: @SQ SN:2759 LN:31857 skipping SAM header line: @SQ SN:2760 LN:36969 skipping SAM header line: @SQ SN:2761 LN:36928 skipping SAM header line: @SQ SN:2762 LN:36873 skipping SAM header line: @SQ SN:2763 LN:36802 skipping SAM header line: @SQ SN:2764 LN:29307 skipping SAM header line: @SQ SN:2765 LN:36665 skipping SAM header line: @SQ SN:2766 LN:36292 skipping SAM header line: @SQ SN:2767 LN:36431 skipping SAM header line: @SQ SN:2768 LN:35950 skipping SAM header line: @SQ SN:2769 LN:36089 skipping SAM header line: @SQ SN:2770 LN:35934 skipping SAM header line: @SQ SN:2771 LN:36099 skipping SAM header line: @SQ SN:2772 LN:36019 skipping SAM header line: @SQ SN:2773 LN:35602 skipping SAM header line: @SQ SN:2774 LN:35874 skipping SAM header line: @SQ SN:2775 LN:35924 skipping SAM header line: @SQ SN:2776 LN:35859 skipping SAM header line: @SQ SN:2777 LN:35905 skipping SAM header line: @SQ SN:2778 LN:35845 skipping SAM header line: @SQ SN:2779 LN:35758 skipping SAM header line: @SQ SN:2780 LN:35663 skipping SAM header line: @SQ SN:2781 LN:35699 skipping SAM header line: @SQ SN:2782 LN:35561 skipping SAM header line: @SQ SN:2783 LN:35490 skipping SAM header line: @SQ SN:2784 LN:35321 skipping SAM header line: @SQ SN:2785 LN:35327 skipping SAM header line: @SQ SN:2786 LN:35328 skipping SAM header line: @SQ SN:2787 LN:35244 skipping SAM header line: @SQ SN:2788 LN:35213 skipping SAM header line: @SQ SN:2789 LN:35134 skipping SAM header line: @SQ SN:2790 LN:35060 skipping SAM header line: @SQ SN:2791 LN:25419 skipping SAM header line: @SQ SN:2792 LN:35014 skipping SAM header line: @SQ SN:2793 LN:34995 skipping SAM header line: @SQ SN:2794 LN:34502 skipping SAM header line: @SQ SN:2795 LN:34637 skipping SAM header line: @SQ SN:2796 LN:34756 skipping SAM header line: @SQ SN:2797 LN:32114 skipping SAM header line: @SQ SN:2798 LN:34592 skipping SAM header line: @SQ SN:2799 LN:34646 skipping SAM header line: @SQ SN:2800 LN:34547 skipping SAM header line: @SQ SN:2801 LN:34564 skipping SAM header line: @SQ SN:2802 LN:34630 skipping SAM header line: @SQ SN:2803 LN:34403 skipping SAM header line: @SQ SN:2804 LN:34158 skipping SAM header line: @SQ SN:2805 LN:26329 skipping SAM header line: @SQ SN:2806 LN:34169 skipping SAM header line: @SQ SN:2807 LN:33949 skipping SAM header line: @SQ SN:2808 LN:33709 skipping SAM header line: @SQ SN:2809 LN:28512 skipping SAM header line: @SQ SN:2810 LN:28778 skipping SAM header line: @SQ SN:2811 LN:33400 skipping SAM header line: @SQ SN:2812 LN:33367 skipping SAM header line: @SQ SN:2813 LN:33309 skipping SAM header line: @SQ SN:2814 LN:33222 skipping SAM header line: @SQ SN:2815 LN:33065 skipping SAM header line: @SQ SN:2816 LN:33152 skipping SAM header line: @SQ SN:2817 LN:32899 skipping SAM header line: @SQ SN:2818 LN:33120 skipping SAM header line: 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skipping SAM header line: @SQ SN:3032 LN:20632 skipping SAM header line: @SQ SN:3033 LN:20540 skipping SAM header line: @SQ SN:3034 LN:20616 skipping SAM header line: @SQ SN:3035 LN:20535 skipping SAM header line: @SQ SN:3036 LN:20509 skipping SAM header line: @SQ SN:3037 LN:20511 skipping SAM header line: @SQ SN:3038 LN:20399 skipping SAM header line: @SQ SN:3039 LN:20437 skipping SAM header line: @SQ SN:3040 LN:20260 skipping SAM header line: @SQ SN:3041 LN:20304 skipping SAM header line: @SQ SN:3042 LN:20219 skipping SAM header line: @SQ SN:3043 LN:20160 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/froger/Mcap_Genome/ -p 4 -score_min L,0,-0.6 -u 10000000 --non_directional -1 /gscratch/srlab/sr320/data/froger/trim/Mc/Meth14.fastp-trim.202003064415_R1_001.fastq.gz -2 /gscratch/srlab/sr320/data/froger/trim/Mc/Meth14.fastp-trim.202003064415_R2_001.fastq.gz -o Mcap_full-u1M" Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 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Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt' Merging from these individual files: Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.1 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.2 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.3 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.4 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.5 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.6 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.7 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.8 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.9 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.10 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.11 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.12 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.13 Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.14 Processed 5433722 lines in total Total number of methylation call strings processed: 10867444 Final Cytosine Methylation Report ================================= Total number of C's analysed: 160424520 Total methylated C's in CpG context: 5224426 Total methylated C's in CHG context: 244205 Total methylated C's in CHH context: 566726 Total C to T conversions in CpG context: 31133304 Total C to T conversions in CHG context: 29930929 Total C to T conversions in CHH context: 93324930 C methylated in CpG context: 14.4% C methylated in CHG context: 0.8% C methylated in CHH context: 0.6% Merging individual M-bias reports into overall M-bias statistics from these 14 individual files: Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.1.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.2.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.3.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.4.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.5.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.6.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.7.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.8.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.9.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.10.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.11.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.12.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.13.mbias Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt.14.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 148 Maximum read length of Read 2: 146 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 148 Maximum read length of Read 2: 146 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt contains data -> kept Using these input files: CpG_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CpG_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CpG_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CpG_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CHG_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CHG_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CHG_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CHG_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CHH_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CHH_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CHH_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt CHH_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt Writing bedGraph to file: Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Merging all input files and sorting everything in memory instead of writing out individual chromosome files... Writing all merged methylation calls to temp file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged Finished writing methylation calls from CpG_OT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_CTOT_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_CTOB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_OB_Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.txt to merged temp file Sorting input file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged by positions (using -S of 75%) Successfully deleted the temporary input file Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged Finished BedGraph conversion ... Checking file >>Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file >Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context from the original top strand to CpG_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the complementary to original top strand to CpG_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the complementary to original bottom strand to CpG_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CpG context from the original bottom strand to CpG_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the original top strand to CHG_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the complementary to original top strand to CHG_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the complementary to original bottom strand to CHG_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHG context from the original bottom strand to CHG_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the original top strand to CHH_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the complementary to original top strand to CHH_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the complementary to original bottom strand to CHH_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing result file containing methylation information for C in CHH context from the original bottom strand to CHH_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Now reading in Bismark result file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:1 LN:3259165 skipping SAM header line: @SQ SN:2 LN:3468816 skipping SAM header line: @SQ SN:3 LN:700192 skipping SAM header line: @SQ SN:4 LN:2934407 skipping SAM header line: @SQ SN:5 LN:2430108 skipping SAM header line: @SQ SN:6 LN:2758956 skipping SAM header line: @SQ SN:7 LN:2199593 skipping SAM header line: @SQ SN:8 LN:63180 skipping SAM header line: @SQ SN:9 LN:2265284 skipping SAM header line: @SQ SN:10 LN:2133031 skipping SAM header line: @SQ SN:11 LN:321139 skipping SAM header line: @SQ SN:12 LN:2060969 skipping SAM header line: @SQ SN:13 LN:2130412 skipping SAM header line: @SQ SN:14 LN:1997637 skipping SAM header line: @SQ SN:15 LN:2070015 skipping SAM header line: 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header line: @SQ SN:80 LN:1309361 skipping SAM header line: @SQ SN:81 LN:1341618 skipping SAM header line: @SQ SN:82 LN:1346785 skipping SAM header line: @SQ SN:83 LN:1333289 skipping SAM header line: @SQ SN:84 LN:1211459 skipping SAM header line: @SQ SN:85 LN:1283853 skipping SAM header line: @SQ SN:86 LN:1290567 skipping SAM header line: @SQ SN:87 LN:1192965 skipping SAM header line: @SQ SN:88 LN:1291894 skipping SAM header line: @SQ SN:89 LN:1260068 skipping SAM header line: @SQ SN:90 LN:1252728 skipping SAM header line: @SQ SN:91 LN:1271595 skipping SAM header line: @SQ SN:92 LN:1230537 skipping SAM header line: @SQ SN:93 LN:1237625 skipping SAM header line: @SQ SN:94 LN:1187499 skipping SAM header line: @SQ SN:95 LN:85829 skipping SAM header line: @SQ SN:96 LN:1221334 skipping SAM header line: @SQ SN:97 LN:1247042 skipping SAM header line: @SQ SN:98 LN:1216221 skipping SAM header line: @SQ SN:99 LN:1155919 skipping SAM header line: @SQ SN:100 LN:1199322 skipping SAM header line: 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line: @SQ SN:122 LN:1136263 skipping SAM header line: @SQ SN:123 LN:1129561 skipping SAM header line: @SQ SN:124 LN:1088222 skipping SAM header line: @SQ SN:125 LN:1134195 skipping SAM header line: @SQ SN:126 LN:1122153 skipping SAM header line: @SQ SN:127 LN:1090085 skipping SAM header line: @SQ SN:128 LN:1108877 skipping SAM header line: @SQ SN:129 LN:1069273 skipping SAM header line: @SQ SN:130 LN:81855 skipping SAM header line: @SQ SN:131 LN:1051189 skipping SAM header line: @SQ SN:132 LN:1107173 skipping SAM header line: @SQ SN:133 LN:1100872 skipping SAM header line: @SQ SN:134 LN:1069836 skipping SAM header line: @SQ SN:135 LN:1014124 skipping SAM header line: @SQ SN:136 LN:1077171 skipping SAM header line: @SQ SN:137 LN:1075285 skipping SAM header line: @SQ SN:138 LN:965987 skipping SAM header line: @SQ SN:139 LN:1064949 skipping SAM header line: @SQ SN:140 LN:972370 skipping SAM header line: @SQ SN:141 LN:1092226 skipping SAM header line: @SQ SN:142 LN:1076623 skipping SAM 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LN:642524 skipping SAM header line: @SQ SN:377 LN:667531 skipping SAM header line: @SQ SN:378 LN:587113 skipping SAM header line: @SQ SN:379 LN:725572 skipping SAM header line: @SQ SN:380 LN:644870 skipping SAM header line: @SQ SN:381 LN:652264 skipping SAM header line: @SQ SN:382 LN:655625 skipping SAM header line: @SQ SN:383 LN:644073 skipping SAM header line: @SQ SN:384 LN:621181 skipping SAM header line: @SQ SN:385 LN:645312 skipping SAM header line: @SQ SN:386 LN:633171 skipping SAM header line: @SQ SN:387 LN:621782 skipping SAM header line: @SQ SN:388 LN:634850 skipping SAM header line: @SQ SN:389 LN:638235 skipping SAM header line: @SQ SN:390 LN:545854 skipping SAM header line: @SQ SN:391 LN:633275 skipping SAM header line: @SQ SN:392 LN:632205 skipping SAM header line: @SQ SN:393 LN:583470 skipping SAM header line: @SQ SN:394 LN:623334 skipping SAM header line: @SQ SN:395 LN:598070 skipping SAM header line: @SQ SN:396 LN:615230 skipping SAM header line: @SQ SN:397 LN:615055 skipping SAM header line: @SQ SN:398 LN:621749 skipping SAM header line: @SQ SN:399 LN:622641 skipping SAM header line: @SQ SN:400 LN:600152 skipping SAM header line: @SQ SN:401 LN:613118 skipping SAM header line: @SQ SN:402 LN:599791 skipping SAM header line: @SQ SN:403 LN:625631 skipping SAM header line: @SQ SN:404 LN:611913 skipping SAM header line: @SQ SN:405 LN:626054 skipping SAM header line: @SQ SN:406 LN:618578 skipping SAM header line: @SQ SN:407 LN:600051 skipping SAM header line: @SQ SN:408 LN:575466 skipping SAM header line: @SQ SN:409 LN:608701 skipping SAM header line: @SQ SN:410 LN:611059 skipping SAM header line: @SQ SN:411 LN:612833 skipping SAM header line: @SQ SN:412 LN:612841 skipping SAM header line: @SQ SN:413 LN:589843 skipping SAM header line: @SQ SN:414 LN:610237 skipping SAM header line: @SQ SN:415 LN:587061 skipping SAM header line: @SQ SN:416 LN:595025 skipping SAM header line: @SQ SN:417 LN:161631 skipping SAM header line: @SQ SN:418 LN:601009 skipping SAM header line: @SQ SN:419 LN:575792 skipping SAM header line: @SQ SN:420 LN:603094 skipping SAM header line: @SQ SN:421 LN:609463 skipping SAM header line: @SQ SN:422 LN:598076 skipping SAM header line: @SQ SN:423 LN:470589 skipping SAM header line: @SQ SN:424 LN:587771 skipping SAM header line: @SQ SN:425 LN:605184 skipping SAM header line: @SQ SN:426 LN:604403 skipping SAM header line: @SQ SN:427 LN:600125 skipping SAM header line: @SQ SN:428 LN:620598 skipping SAM header line: @SQ SN:429 LN:587584 skipping SAM header line: @SQ SN:430 LN:598740 skipping SAM header line: @SQ SN:431 LN:625547 skipping SAM header line: @SQ SN:432 LN:595354 skipping SAM header line: @SQ SN:433 LN:599720 skipping SAM header line: @SQ SN:434 LN:599950 skipping SAM header line: @SQ SN:435 LN:111371 skipping SAM header line: @SQ SN:436 LN:595002 skipping SAM header line: @SQ SN:437 LN:566460 skipping SAM header line: @SQ SN:438 LN:595148 skipping SAM header line: @SQ SN:439 LN:588360 skipping SAM header line: @SQ SN:440 LN:490454 skipping SAM header line: @SQ SN:441 LN:600678 skipping SAM header line: @SQ SN:442 LN:600084 skipping SAM header line: @SQ SN:443 LN:574125 skipping SAM header line: @SQ SN:444 LN:587509 skipping SAM header line: @SQ SN:445 LN:587594 skipping SAM header line: @SQ SN:446 LN:596445 skipping SAM header line: @SQ SN:447 LN:536900 skipping SAM header line: @SQ SN:448 LN:586986 skipping SAM header line: @SQ SN:449 LN:530954 skipping SAM header line: @SQ SN:450 LN:501158 skipping SAM header line: @SQ SN:451 LN:583793 skipping SAM header line: @SQ SN:452 LN:578365 skipping SAM header line: @SQ SN:453 LN:582895 skipping SAM header line: @SQ SN:454 LN:578969 skipping SAM header line: @SQ SN:455 LN:581618 skipping SAM header line: @SQ SN:456 LN:510952 skipping SAM header line: @SQ SN:457 LN:580424 skipping SAM header line: @SQ SN:458 LN:581303 skipping SAM header line: @SQ SN:459 LN:573012 skipping SAM header line: @SQ SN:460 LN:578425 skipping SAM header line: @SQ SN:461 LN:566703 skipping SAM header line: @SQ SN:462 LN:579403 skipping SAM header line: @SQ SN:463 LN:584138 skipping SAM header line: @SQ SN:464 LN:575617 skipping SAM header line: @SQ SN:465 LN:572581 skipping SAM header line: @SQ SN:466 LN:534558 skipping SAM header line: @SQ SN:467 LN:517773 skipping SAM header line: @SQ SN:468 LN:71509 skipping SAM header line: @SQ SN:469 LN:551605 skipping SAM header line: @SQ SN:470 LN:551149 skipping SAM header line: @SQ SN:471 LN:558920 skipping SAM header line: @SQ SN:472 LN:569790 skipping SAM header line: @SQ SN:473 LN:575543 skipping SAM header line: @SQ SN:474 LN:570375 skipping SAM header line: @SQ SN:475 LN:570020 skipping SAM header line: @SQ SN:476 LN:569037 skipping SAM header line: @SQ SN:477 LN:568945 skipping SAM header line: @SQ SN:478 LN:567414 skipping SAM header line: @SQ SN:479 LN:567422 skipping SAM header line: @SQ SN:480 LN:565746 skipping SAM header line: @SQ SN:481 LN:558202 skipping SAM header line: @SQ SN:482 LN:560620 skipping SAM header line: @SQ SN:483 LN:576607 skipping SAM header line: @SQ SN:484 LN:547167 skipping SAM header line: @SQ SN:485 LN:559992 skipping SAM header line: @SQ SN:486 LN:524518 skipping SAM header line: @SQ SN:487 LN:579447 skipping SAM header line: @SQ SN:488 LN:463101 skipping SAM header line: @SQ SN:489 LN:552563 skipping SAM header line: @SQ SN:490 LN:538328 skipping SAM header line: @SQ SN:491 LN:556977 skipping SAM header line: @SQ SN:492 LN:569539 skipping SAM header line: @SQ SN:493 LN:571496 skipping SAM header line: @SQ SN:494 LN:552813 skipping SAM header line: @SQ SN:495 LN:560492 skipping SAM header line: @SQ SN:496 LN:97609 skipping SAM header line: @SQ SN:497 LN:540623 skipping SAM header line: @SQ SN:498 LN:528357 skipping SAM header line: @SQ SN:499 LN:547607 skipping SAM header line: @SQ SN:500 LN:530179 skipping SAM header line: @SQ SN:501 LN:500029 skipping SAM header line: @SQ SN:502 LN:53510 skipping SAM header line: @SQ SN:503 LN:544824 skipping SAM header line: @SQ SN:504 LN:545115 skipping SAM header line: @SQ SN:505 LN:555815 skipping SAM header line: @SQ SN:506 LN:570396 skipping SAM header line: @SQ SN:507 LN:539574 skipping SAM header line: @SQ SN:508 LN:538865 skipping SAM header line: @SQ SN:509 LN:537929 skipping SAM header line: @SQ SN:510 LN:519071 skipping SAM header line: @SQ SN:511 LN:523199 skipping SAM header line: @SQ SN:512 LN:538148 skipping SAM header line: @SQ SN:513 LN:202321 skipping SAM header line: @SQ SN:514 LN:536663 skipping SAM header line: @SQ SN:515 LN:531172 skipping SAM header line: @SQ SN:516 LN:533537 skipping SAM header line: @SQ SN:517 LN:531129 skipping SAM header line: @SQ SN:518 LN:440934 skipping SAM header line: @SQ SN:519 LN:485156 skipping SAM header line: @SQ SN:520 LN:273908 skipping SAM header line: @SQ SN:521 LN:527752 skipping SAM header line: @SQ SN:522 LN:512991 skipping SAM header line: @SQ SN:523 LN:533526 skipping SAM header line: @SQ SN:524 LN:530815 skipping SAM header line: @SQ SN:525 LN:530007 skipping SAM header line: @SQ SN:526 LN:574263 skipping SAM header line: @SQ SN:527 LN:529636 skipping SAM header line: @SQ SN:528 LN:517086 skipping SAM header line: @SQ SN:529 LN:532209 skipping SAM header line: @SQ SN:530 LN:549308 skipping SAM header line: @SQ SN:531 LN:525903 skipping SAM header line: @SQ SN:532 LN:119706 skipping SAM header line: @SQ SN:533 LN:513614 skipping SAM header line: @SQ SN:534 LN:504850 skipping SAM header line: @SQ SN:535 LN:517574 skipping SAM header line: @SQ SN:536 LN:87592 skipping SAM header line: @SQ SN:537 LN:520353 skipping SAM header line: @SQ SN:538 LN:521348 skipping SAM header line: @SQ SN:539 LN:530593 skipping SAM header line: @SQ SN:540 LN:495380 skipping SAM header line: @SQ SN:541 LN:425043 skipping SAM header line: @SQ SN:542 LN:530805 skipping SAM header line: @SQ SN:543 LN:514973 skipping SAM header line: @SQ SN:544 LN:522518 skipping SAM header line: @SQ SN:545 LN:543214 skipping SAM header line: @SQ SN:546 LN:534800 skipping SAM header line: @SQ SN:547 LN:502851 skipping SAM header line: @SQ SN:548 LN:483827 skipping SAM header line: @SQ SN:549 LN:512847 skipping SAM header line: @SQ SN:550 LN:511675 skipping SAM header line: @SQ SN:551 LN:514580 skipping SAM header line: @SQ SN:552 LN:539493 skipping SAM header line: @SQ SN:553 LN:507885 skipping SAM header line: @SQ SN:554 LN:515365 skipping SAM header line: @SQ SN:555 LN:469598 skipping SAM header line: @SQ SN:556 LN:481181 skipping SAM header line: @SQ SN:557 LN:508295 skipping SAM header line: @SQ SN:558 LN:503205 skipping SAM header line: @SQ SN:559 LN:507269 skipping SAM header line: @SQ SN:560 LN:499689 skipping SAM header line: @SQ SN:561 LN:499996 skipping SAM header line: @SQ SN:562 LN:508243 skipping SAM header line: @SQ SN:563 LN:500844 skipping SAM header line: @SQ SN:564 LN:508062 skipping SAM header line: @SQ SN:565 LN:501448 skipping SAM header line: @SQ SN:566 LN:474183 skipping SAM header line: @SQ SN:567 LN:367063 skipping SAM header line: @SQ SN:568 LN:498357 skipping SAM header line: @SQ SN:569 LN:513150 skipping SAM header line: @SQ SN:570 LN:498906 skipping SAM header line: @SQ SN:571 LN:498700 skipping SAM header line: @SQ SN:572 LN:472164 skipping SAM header line: @SQ SN:573 LN:507436 skipping SAM header line: @SQ SN:574 LN:505070 skipping SAM header line: @SQ SN:575 LN:497506 skipping SAM header line: @SQ SN:576 LN:496180 skipping SAM header line: @SQ SN:577 LN:495190 skipping SAM header line: @SQ SN:578 LN:486825 skipping SAM header line: @SQ SN:579 LN:491352 skipping SAM header line: @SQ SN:580 LN:493215 skipping SAM header line: @SQ SN:581 LN:502157 skipping SAM header line: @SQ SN:582 LN:507220 skipping SAM header line: @SQ SN:583 LN:491273 skipping SAM header line: @SQ SN:584 LN:488168 skipping SAM header line: @SQ SN:585 LN:490515 skipping SAM header line: @SQ SN:586 LN:448915 skipping SAM header line: @SQ SN:587 LN:491040 skipping SAM header line: @SQ SN:588 LN:102780 skipping SAM header line: @SQ SN:589 LN:491591 skipping SAM header line: @SQ SN:590 LN:485753 skipping SAM header line: @SQ SN:591 LN:485704 skipping SAM header line: @SQ SN:592 LN:485033 skipping SAM header line: @SQ SN:593 LN:481401 skipping SAM header line: @SQ SN:594 LN:502831 skipping SAM header line: @SQ SN:595 LN:483572 skipping SAM header line: @SQ SN:596 LN:44697 skipping SAM header line: @SQ SN:597 LN:483527 skipping SAM header line: @SQ SN:598 LN:480775 skipping SAM header line: @SQ SN:599 LN:475985 skipping SAM header line: @SQ SN:600 LN:474163 skipping SAM header line: @SQ SN:601 LN:55408 skipping SAM header line: @SQ SN:602 LN:313213 skipping SAM header line: @SQ SN:603 LN:482861 skipping SAM header line: @SQ SN:604 LN:477177 skipping SAM header line: @SQ SN:605 LN:477769 skipping SAM header line: @SQ SN:606 LN:474382 skipping SAM header line: @SQ SN:607 LN:474193 skipping SAM header line: @SQ SN:608 LN:427787 skipping SAM header line: @SQ SN:609 LN:455860 skipping SAM header line: @SQ SN:610 LN:480570 skipping SAM header line: @SQ SN:611 LN:469516 skipping SAM header line: @SQ SN:612 LN:478916 skipping SAM header line: @SQ SN:613 LN:459886 skipping SAM header line: @SQ SN:614 LN:448698 skipping SAM header line: @SQ SN:615 LN:469093 skipping SAM header line: @SQ SN:616 LN:470170 skipping SAM header line: @SQ SN:617 LN:466607 skipping SAM header line: @SQ SN:618 LN:409627 skipping SAM header line: @SQ SN:619 LN:475660 skipping SAM header line: @SQ SN:620 LN:460872 skipping SAM header line: @SQ SN:621 LN:474897 skipping SAM header line: @SQ SN:622 LN:463119 skipping SAM header line: @SQ SN:623 LN:481900 skipping SAM header line: @SQ SN:624 LN:464739 skipping SAM header line: @SQ SN:625 LN:460648 skipping SAM header line: @SQ SN:626 LN:469521 skipping SAM header line: @SQ SN:627 LN:462935 skipping SAM header line: @SQ SN:628 LN:456398 skipping SAM header line: @SQ SN:629 LN:461014 skipping SAM header line: @SQ SN:630 LN:464462 skipping SAM header line: @SQ SN:631 LN:463768 skipping SAM header line: @SQ SN:632 LN:451112 skipping SAM header line: @SQ SN:633 LN:449639 skipping SAM header line: @SQ SN:634 LN:459764 skipping SAM header line: @SQ SN:635 LN:468137 skipping SAM header line: @SQ SN:636 LN:472955 skipping SAM header line: @SQ SN:637 LN:448732 skipping SAM header line: @SQ SN:638 LN:444434 skipping SAM header line: @SQ SN:639 LN:456211 skipping SAM header line: @SQ SN:640 LN:453683 skipping SAM header line: @SQ SN:641 LN:455740 skipping SAM header line: @SQ SN:642 LN:455536 skipping SAM header line: @SQ SN:643 LN:456391 skipping SAM header line: @SQ SN:644 LN:461110 skipping SAM header line: @SQ SN:645 LN:450701 skipping SAM header line: @SQ SN:646 LN:448049 skipping SAM header line: @SQ SN:647 LN:450857 skipping SAM header line: @SQ SN:648 LN:453200 skipping SAM header line: @SQ SN:649 LN:452056 skipping SAM header line: @SQ SN:650 LN:347654 skipping SAM header line: @SQ SN:651 LN:474497 skipping SAM header line: @SQ SN:652 LN:449026 skipping SAM header line: @SQ SN:653 LN:449685 skipping SAM header line: @SQ SN:654 LN:450282 skipping SAM header line: @SQ SN:655 LN:356288 skipping SAM header line: @SQ SN:656 LN:425557 skipping SAM header line: @SQ SN:657 LN:449128 skipping SAM header line: @SQ SN:658 LN:448219 skipping SAM header line: @SQ SN:659 LN:452944 skipping SAM header line: @SQ SN:660 LN:456621 skipping SAM header line: @SQ SN:661 LN:437033 skipping SAM header line: @SQ SN:662 LN:447083 skipping SAM header line: @SQ SN:663 LN:453111 skipping SAM header line: @SQ SN:664 LN:426810 skipping SAM header line: @SQ SN:665 LN:445139 skipping SAM header line: @SQ SN:666 LN:445066 skipping SAM header line: @SQ SN:667 LN:444892 skipping SAM header line: @SQ SN:668 LN:448521 skipping SAM header line: @SQ SN:669 LN:443692 skipping SAM header line: @SQ SN:670 LN:391903 skipping SAM header line: @SQ SN:671 LN:423152 skipping SAM header line: @SQ SN:672 LN:403722 skipping SAM header line: @SQ SN:673 LN:418819 skipping SAM header line: @SQ SN:674 LN:432438 skipping SAM header line: @SQ SN:675 LN:438917 skipping SAM header line: @SQ SN:676 LN:147096 skipping SAM header line: @SQ SN:677 LN:436480 skipping SAM header line: @SQ SN:678 LN:436231 skipping SAM header line: @SQ SN:679 LN:427776 skipping SAM header line: @SQ SN:680 LN:425854 skipping SAM header line: @SQ SN:681 LN:435429 skipping SAM header line: @SQ SN:682 LN:437488 skipping SAM header line: @SQ SN:683 LN:446216 skipping SAM header line: @SQ SN:684 LN:424550 skipping SAM header line: @SQ SN:685 LN:182265 skipping SAM header line: @SQ SN:686 LN:433824 skipping SAM header line: @SQ SN:687 LN:741164 skipping SAM header line: @SQ SN:688 LN:427018 skipping SAM header line: @SQ SN:689 LN:431173 skipping SAM header line: @SQ SN:690 LN:463616 skipping SAM header line: @SQ SN:691 LN:420764 skipping SAM header line: @SQ SN:692 LN:434721 skipping SAM header line: @SQ SN:693 LN:412504 skipping SAM header line: @SQ SN:694 LN:429344 skipping SAM header line: @SQ SN:695 LN:404055 skipping SAM header line: @SQ SN:696 LN:234456 skipping SAM header line: @SQ SN:697 LN:289569 skipping SAM header line: @SQ SN:698 LN:426645 skipping SAM header line: @SQ SN:699 LN:427205 skipping SAM header line: @SQ SN:700 LN:435412 skipping SAM header line: @SQ SN:701 LN:425139 skipping SAM header line: @SQ SN:702 LN:422562 skipping SAM header line: @SQ SN:703 LN:424435 skipping SAM header line: @SQ SN:704 LN:424247 skipping SAM header line: @SQ SN:705 LN:423916 skipping SAM header line: @SQ SN:706 LN:378426 skipping SAM header line: @SQ SN:707 LN:422545 skipping SAM header line: @SQ SN:708 LN:405782 skipping SAM header line: @SQ SN:709 LN:421031 skipping SAM header line: @SQ SN:710 LN:435710 skipping SAM header line: @SQ SN:711 LN:420506 skipping SAM header line: @SQ SN:712 LN:402597 skipping SAM header line: @SQ SN:713 LN:416603 skipping SAM header line: @SQ SN:714 LN:429444 skipping SAM header line: @SQ SN:715 LN:432166 skipping SAM header line: @SQ SN:716 LN:235192 skipping SAM header line: @SQ SN:717 LN:400324 skipping SAM header line: @SQ SN:718 LN:415365 skipping SAM header line: @SQ SN:719 LN:418292 skipping SAM header line: @SQ SN:720 LN:414387 skipping SAM header line: @SQ SN:721 LN:79852 skipping SAM header line: @SQ SN:722 LN:414968 skipping SAM header line: @SQ SN:723 LN:413712 skipping SAM header line: @SQ SN:724 LN:48430 skipping SAM header line: @SQ SN:725 LN:430069 skipping SAM header line: @SQ SN:726 LN:430606 skipping SAM header line: @SQ SN:727 LN:406873 skipping SAM header line: @SQ SN:728 LN:284858 skipping SAM header line: @SQ SN:729 LN:419837 skipping SAM header line: @SQ SN:730 LN:397986 skipping SAM header line: @SQ SN:731 LN:401458 skipping SAM header line: @SQ SN:732 LN:394891 skipping SAM header line: @SQ SN:733 LN:412565 skipping SAM header line: @SQ SN:734 LN:409607 skipping SAM header line: @SQ SN:735 LN:409953 skipping SAM header line: @SQ SN:736 LN:407838 skipping SAM header line: @SQ SN:737 LN:415301 skipping SAM header line: @SQ SN:738 LN:406847 skipping SAM header line: @SQ SN:739 LN:411697 skipping SAM header line: @SQ SN:740 LN:398437 skipping SAM header line: @SQ SN:741 LN:405831 skipping SAM header line: @SQ SN:742 LN:99037 skipping SAM header line: @SQ SN:743 LN:389039 skipping SAM header line: @SQ SN:744 LN:398687 skipping SAM header line: @SQ SN:745 LN:130670 skipping SAM header line: @SQ SN:746 LN:444002 skipping SAM header line: @SQ SN:747 LN:402043 skipping SAM header line: @SQ SN:748 LN:383610 skipping SAM header line: @SQ SN:749 LN:390984 skipping SAM header line: @SQ SN:750 LN:436599 skipping SAM header line: @SQ SN:751 LN:417599 skipping SAM header line: @SQ SN:752 LN:385831 skipping SAM header line: @SQ SN:753 LN:395460 skipping SAM header line: @SQ SN:754 LN:395762 skipping SAM header line: @SQ SN:755 LN:397251 skipping SAM header line: @SQ SN:756 LN:397436 skipping SAM header line: @SQ SN:757 LN:392298 skipping SAM header line: @SQ SN:758 LN:395736 skipping SAM header line: @SQ SN:759 LN:387508 skipping SAM header line: @SQ SN:760 LN:398065 skipping SAM header line: @SQ SN:761 LN:344936 skipping SAM header line: @SQ SN:762 LN:393232 skipping SAM header line: @SQ SN:763 LN:381506 skipping SAM header line: @SQ SN:764 LN:392087 skipping SAM header line: @SQ SN:765 LN:316368 skipping SAM header line: @SQ SN:766 LN:394948 skipping SAM header line: @SQ SN:767 LN:383267 skipping SAM header line: @SQ SN:768 LN:46266 skipping SAM header line: @SQ SN:769 LN:387910 skipping SAM header line: @SQ SN:770 LN:400889 skipping SAM header line: @SQ SN:771 LN:547451 skipping SAM header line: @SQ SN:772 LN:371662 skipping SAM header line: @SQ SN:773 LN:386775 skipping SAM header line: @SQ SN:774 LN:391584 skipping SAM header line: @SQ SN:775 LN:384950 skipping SAM header line: @SQ SN:776 LN:396881 skipping SAM header line: @SQ SN:777 LN:366614 skipping SAM header line: @SQ SN:778 LN:397433 skipping SAM header line: @SQ SN:779 LN:396173 skipping SAM header line: @SQ SN:780 LN:381046 skipping SAM header line: @SQ SN:781 LN:388134 skipping SAM header line: @SQ SN:782 LN:380597 skipping SAM header line: @SQ SN:783 LN:381881 skipping SAM header line: @SQ SN:784 LN:373782 skipping SAM header line: @SQ SN:785 LN:411776 skipping SAM header line: @SQ SN:786 LN:386877 skipping SAM header line: @SQ SN:787 LN:384798 skipping SAM header line: @SQ SN:788 LN:383900 skipping SAM header line: @SQ SN:789 LN:371178 skipping SAM header line: @SQ SN:790 LN:72726 skipping SAM header line: @SQ SN:791 LN:382892 skipping SAM header line: @SQ SN:792 LN:396886 skipping SAM header line: @SQ SN:793 LN:381384 skipping SAM header line: @SQ SN:794 LN:392348 skipping SAM header line: @SQ SN:795 LN:375776 skipping SAM header line: @SQ SN:796 LN:372990 skipping SAM header line: @SQ SN:797 LN:298488 skipping SAM header line: @SQ SN:798 LN:370460 skipping SAM header line: @SQ SN:799 LN:379978 skipping SAM header line: @SQ SN:800 LN:381596 skipping SAM header line: @SQ SN:801 LN:379742 skipping SAM header line: @SQ SN:802 LN:394013 skipping SAM header line: @SQ SN:803 LN:379113 skipping SAM header line: @SQ SN:804 LN:379013 skipping SAM header line: @SQ SN:805 LN:360050 skipping SAM header line: @SQ SN:806 LN:386700 skipping SAM header line: @SQ SN:807 LN:378051 skipping SAM header line: @SQ SN:808 LN:377770 skipping SAM header line: @SQ SN:809 LN:368183 skipping SAM header line: @SQ SN:810 LN:376624 skipping SAM header line: @SQ SN:811 LN:375857 skipping SAM header line: @SQ SN:812 LN:381882 skipping SAM header line: @SQ SN:813 LN:374696 skipping SAM header line: @SQ SN:814 LN:42156 skipping SAM header line: @SQ SN:815 LN:372968 skipping SAM header line: @SQ SN:816 LN:373635 skipping SAM header line: @SQ SN:817 LN:373320 skipping SAM header line: @SQ SN:818 LN:366336 skipping SAM header line: @SQ SN:819 LN:352869 skipping SAM header line: @SQ SN:820 LN:40412 skipping SAM header line: @SQ SN:821 LN:371267 skipping SAM header line: @SQ SN:822 LN:369663 skipping SAM header line: @SQ SN:823 LN:369681 skipping SAM header line: @SQ SN:824 LN:353668 skipping SAM header line: @SQ SN:825 LN:369950 skipping SAM header line: @SQ SN:826 LN:368782 skipping SAM header line: @SQ SN:827 LN:304921 skipping SAM header line: @SQ SN:828 LN:370762 skipping SAM header line: @SQ SN:829 LN:371122 skipping SAM header line: @SQ SN:830 LN:366251 skipping SAM header line: @SQ SN:831 LN:371714 skipping SAM header line: @SQ SN:832 LN:359102 skipping SAM header line: @SQ SN:833 LN:365317 skipping SAM header line: @SQ SN:834 LN:367204 skipping SAM header line: @SQ SN:835 LN:365964 skipping SAM header line: @SQ SN:836 LN:364988 skipping SAM header line: @SQ SN:837 LN:361366 skipping SAM header line: @SQ SN:838 LN:360139 skipping SAM header line: @SQ SN:839 LN:364473 skipping SAM header line: @SQ SN:840 LN:371420 skipping SAM header line: @SQ SN:841 LN:347574 skipping SAM header line: @SQ SN:842 LN:369654 skipping SAM header line: @SQ SN:843 LN:266194 skipping SAM header line: @SQ SN:844 LN:367180 skipping SAM header line: @SQ SN:845 LN:367810 skipping SAM header line: @SQ SN:846 LN:357723 skipping SAM header line: @SQ SN:847 LN:365180 skipping SAM header line: @SQ SN:848 LN:363582 skipping SAM header line: @SQ SN:849 LN:359726 skipping SAM header line: @SQ SN:850 LN:340455 skipping SAM header line: @SQ SN:851 LN:359384 skipping SAM header line: @SQ SN:852 LN:346847 skipping SAM header line: @SQ SN:853 LN:360137 skipping SAM header line: @SQ SN:854 LN:351529 skipping SAM header line: @SQ SN:855 LN:351165 skipping SAM header line: @SQ SN:856 LN:359992 skipping SAM header line: @SQ SN:857 LN:50536 skipping SAM header line: @SQ SN:858 LN:353816 skipping SAM header line: @SQ SN:859 LN:323622 skipping SAM header line: @SQ SN:860 LN:351148 skipping SAM header line: @SQ SN:861 LN:353826 skipping SAM header line: @SQ SN:862 LN:353823 skipping SAM header line: @SQ SN:863 LN:359048 skipping SAM header line: @SQ SN:864 LN:349439 skipping SAM header line: @SQ SN:865 LN:353667 skipping SAM header line: @SQ SN:866 LN:200483 skipping SAM header line: @SQ SN:867 LN:353045 skipping SAM header line: @SQ SN:868 LN:351198 skipping SAM header line: @SQ SN:869 LN:367555 skipping SAM header line: @SQ SN:870 LN:364726 skipping SAM header line: @SQ SN:871 LN:342655 skipping SAM header line: @SQ SN:872 LN:336991 skipping SAM header line: @SQ SN:873 LN:344588 skipping SAM header line: @SQ SN:874 LN:349750 skipping SAM header line: @SQ SN:875 LN:350262 skipping SAM header line: @SQ SN:876 LN:362711 skipping SAM header line: @SQ SN:877 LN:356104 skipping SAM header line: @SQ SN:878 LN:349885 skipping SAM header line: @SQ SN:879 LN:332424 skipping SAM header line: @SQ SN:880 LN:348545 skipping SAM header line: @SQ SN:881 LN:346872 skipping SAM header line: @SQ SN:882 LN:348631 skipping SAM header line: @SQ SN:883 LN:347554 skipping SAM header line: @SQ SN:884 LN:347194 skipping SAM header line: @SQ SN:885 LN:347300 skipping SAM header line: @SQ SN:886 LN:346765 skipping SAM header line: @SQ SN:887 LN:346457 skipping SAM header line: @SQ SN:888 LN:338405 skipping SAM header line: @SQ SN:889 LN:347374 skipping SAM header line: @SQ SN:890 LN:351688 skipping SAM header line: @SQ SN:891 LN:345243 skipping SAM header line: @SQ SN:892 LN:354364 skipping SAM header line: @SQ SN:893 LN:24229 skipping SAM header line: @SQ SN:894 LN:343006 skipping SAM header line: @SQ SN:895 LN:340302 skipping SAM header line: @SQ SN:896 LN:345059 skipping SAM header line: @SQ SN:897 LN:342604 skipping SAM header line: @SQ SN:898 LN:97592 skipping SAM header line: @SQ SN:899 LN:345128 skipping SAM header line: @SQ SN:900 LN:354769 skipping SAM header line: @SQ SN:901 LN:342845 skipping SAM header line: @SQ SN:902 LN:343617 skipping SAM header line: @SQ SN:903 LN:356715 skipping SAM header line: @SQ SN:904 LN:355647 skipping SAM header line: @SQ SN:905 LN:338320 skipping SAM header line: @SQ SN:906 LN:361461 skipping SAM header line: @SQ SN:907 LN:337907 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header line: @SQ SN:929 LN:330647 skipping SAM header line: @SQ SN:930 LN:329829 skipping SAM header line: @SQ SN:931 LN:251331 skipping SAM header line: @SQ SN:932 LN:326574 skipping SAM header line: @SQ SN:933 LN:329506 skipping SAM header line: @SQ SN:934 LN:62832 skipping SAM header line: @SQ SN:935 LN:329315 skipping SAM header line: @SQ SN:936 LN:327755 skipping SAM header line: @SQ SN:937 LN:292605 skipping SAM header line: @SQ SN:938 LN:334947 skipping SAM header line: @SQ SN:939 LN:363126 skipping SAM header line: @SQ SN:940 LN:323080 skipping SAM header line: @SQ SN:941 LN:326116 skipping SAM header line: @SQ SN:942 LN:325737 skipping SAM header line: @SQ SN:943 LN:330410 skipping SAM header line: @SQ SN:944 LN:328858 skipping SAM header line: @SQ SN:945 LN:327312 skipping SAM header line: @SQ SN:946 LN:325116 skipping SAM header line: @SQ SN:947 LN:324693 skipping SAM header line: @SQ SN:948 LN:351163 skipping SAM header line: @SQ SN:949 LN:322274 skipping SAM header line: 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LN:314579 skipping SAM header line: @SQ SN:972 LN:313870 skipping SAM header line: @SQ SN:973 LN:320639 skipping SAM header line: @SQ SN:974 LN:313507 skipping SAM header line: @SQ SN:975 LN:316393 skipping SAM header line: @SQ SN:976 LN:313205 skipping SAM header line: @SQ SN:977 LN:313020 skipping SAM header line: @SQ SN:978 LN:312640 skipping SAM header line: @SQ SN:979 LN:309438 skipping SAM header line: @SQ SN:980 LN:311274 skipping SAM header line: @SQ SN:981 LN:303111 skipping SAM header line: @SQ SN:982 LN:292525 skipping SAM header line: @SQ SN:983 LN:310705 skipping SAM header line: @SQ SN:984 LN:306074 skipping SAM header line: @SQ SN:985 LN:310456 skipping SAM header line: @SQ SN:986 LN:310003 skipping SAM header line: @SQ SN:987 LN:309835 skipping SAM header line: @SQ SN:988 LN:311076 skipping SAM header line: @SQ SN:989 LN:307346 skipping SAM header line: @SQ SN:990 LN:308103 skipping SAM header line: @SQ SN:991 LN:307662 skipping SAM header line: @SQ SN:992 LN:307867 skipping SAM header line: @SQ SN:993 LN:324000 skipping SAM header line: @SQ SN:994 LN:301234 skipping SAM header line: @SQ SN:995 LN:306685 skipping SAM header line: @SQ SN:996 LN:305566 skipping SAM header line: @SQ SN:997 LN:305092 skipping SAM header line: @SQ SN:998 LN:237765 skipping SAM header line: @SQ SN:999 LN:304471 skipping SAM header line: @SQ SN:1000 LN:304008 skipping SAM header line: @SQ SN:1001 LN:301285 skipping SAM header line: @SQ SN:1002 LN:300118 skipping SAM header line: @SQ SN:1003 LN:305518 skipping SAM header line: @SQ SN:1004 LN:293628 skipping SAM header line: @SQ SN:1005 LN:292917 skipping SAM header line: @SQ SN:1006 LN:303002 skipping SAM header line: @SQ SN:1007 LN:291493 skipping SAM header line: @SQ SN:1008 LN:300327 skipping SAM header line: @SQ SN:1009 LN:302837 skipping SAM header line: @SQ SN:1010 LN:301730 skipping SAM header line: @SQ SN:1011 LN:301326 skipping SAM header line: @SQ SN:1012 LN:310866 skipping SAM header line: @SQ SN:1013 LN:298465 skipping SAM header line: @SQ SN:1014 LN:294296 skipping SAM header line: @SQ SN:1015 LN:288226 skipping SAM header line: @SQ SN:1016 LN:306245 skipping SAM header line: @SQ SN:1017 LN:296654 skipping SAM header line: @SQ SN:1018 LN:294848 skipping SAM header line: @SQ SN:1019 LN:298657 skipping SAM header line: @SQ SN:1020 LN:300771 skipping SAM header line: @SQ SN:1021 LN:298285 skipping SAM header line: @SQ SN:1022 LN:298386 skipping SAM header line: @SQ SN:1023 LN:273548 skipping SAM header line: @SQ SN:1024 LN:255430 skipping SAM header line: @SQ SN:1025 LN:281074 skipping SAM header line: @SQ SN:1026 LN:295590 skipping SAM header line: @SQ SN:1027 LN:301494 skipping SAM header line: @SQ SN:1028 LN:293820 skipping SAM header line: @SQ SN:1029 LN:302112 skipping SAM header line: @SQ SN:1030 LN:290316 skipping SAM header line: @SQ SN:1031 LN:303714 skipping SAM header line: @SQ SN:1032 LN:294941 skipping SAM header line: @SQ SN:1033 LN:282812 skipping SAM header line: @SQ SN:1034 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line: @SQ SN:1076 LN:256401 skipping SAM header line: @SQ SN:1077 LN:284396 skipping SAM header line: @SQ SN:1078 LN:284413 skipping SAM header line: @SQ SN:1079 LN:284260 skipping SAM header line: @SQ SN:1080 LN:284152 skipping SAM header line: @SQ SN:1081 LN:287778 skipping SAM header line: @SQ SN:1082 LN:269027 skipping SAM header line: @SQ SN:1083 LN:289051 skipping SAM header line: @SQ SN:1084 LN:58854 skipping SAM header line: @SQ SN:1085 LN:282020 skipping SAM header line: @SQ SN:1086 LN:284260 skipping SAM header line: @SQ SN:1087 LN:280158 skipping SAM header line: @SQ SN:1088 LN:266130 skipping SAM header line: @SQ SN:1089 LN:279803 skipping SAM header line: @SQ SN:1090 LN:281627 skipping SAM header line: @SQ SN:1091 LN:279634 skipping SAM header line: @SQ SN:1092 LN:282320 skipping SAM header line: @SQ SN:1093 LN:272822 skipping SAM header line: @SQ SN:1094 LN:275629 skipping SAM header line: @SQ SN:1095 LN:277278 skipping SAM header line: @SQ SN:1096 LN:278671 skipping SAM header line: @SQ SN:1097 LN:278358 skipping SAM header line: @SQ SN:1098 LN:284107 skipping SAM header line: @SQ SN:1099 LN:122725 skipping SAM header line: @SQ SN:1100 LN:277818 skipping SAM header line: @SQ SN:1101 LN:259802 skipping SAM header line: @SQ SN:1102 LN:289764 skipping SAM header line: @SQ SN:1103 LN:284835 skipping SAM header line: @SQ SN:1104 LN:277169 skipping SAM header line: @SQ SN:1105 LN:277159 skipping SAM header line: @SQ SN:1106 LN:277272 skipping SAM header line: @SQ SN:1107 LN:276371 skipping SAM header line: @SQ SN:1108 LN:281210 skipping SAM header line: @SQ SN:1109 LN:276100 skipping SAM header line: @SQ SN:1110 LN:275668 skipping SAM header line: @SQ SN:1111 LN:275732 skipping SAM header line: @SQ SN:1112 LN:275822 skipping SAM header line: @SQ SN:1113 LN:274233 skipping SAM header line: @SQ SN:1114 LN:274995 skipping SAM header line: @SQ SN:1115 LN:270769 skipping SAM header line: @SQ SN:1116 LN:269163 skipping SAM header line: @SQ SN:1117 LN:274028 skipping SAM header line: @SQ SN:1118 LN:273787 skipping SAM header line: @SQ SN:1119 LN:273694 skipping SAM header line: @SQ SN:1120 LN:275974 skipping SAM header line: @SQ SN:1121 LN:208364 skipping SAM header line: @SQ SN:1122 LN:279973 skipping SAM header line: @SQ SN:1123 LN:259296 skipping SAM header line: @SQ SN:1124 LN:270835 skipping SAM header line: @SQ SN:1125 LN:253273 skipping SAM header line: @SQ SN:1126 LN:271404 skipping SAM header line: @SQ SN:1127 LN:87856 skipping SAM header line: @SQ SN:1128 LN:281497 skipping SAM header line: @SQ SN:1129 LN:263475 skipping SAM header line: @SQ SN:1130 LN:270688 skipping SAM header line: @SQ SN:1131 LN:270258 skipping SAM header line: @SQ SN:1132 LN:269965 skipping SAM header line: @SQ SN:1133 LN:270294 skipping SAM header line: @SQ SN:1134 LN:270153 skipping SAM header line: @SQ SN:1135 LN:339527 skipping SAM header line: @SQ SN:1136 LN:268610 skipping SAM header line: @SQ SN:1137 LN:269459 skipping SAM header line: @SQ SN:1138 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line: @SQ SN:1180 LN:250277 skipping SAM header line: @SQ SN:1181 LN:249222 skipping SAM header line: @SQ SN:1182 LN:226034 skipping SAM header line: @SQ SN:1183 LN:250194 skipping SAM header line: @SQ SN:1184 LN:89849 skipping SAM header line: @SQ SN:1185 LN:244461 skipping SAM header line: @SQ SN:1186 LN:249134 skipping SAM header line: @SQ SN:1187 LN:246355 skipping SAM header line: @SQ SN:1188 LN:237275 skipping SAM header line: @SQ SN:1189 LN:244103 skipping SAM header line: @SQ SN:1190 LN:243243 skipping SAM header line: @SQ SN:1191 LN:259006 skipping SAM header line: @SQ SN:1192 LN:247589 skipping SAM header line: @SQ SN:1193 LN:247870 skipping SAM header line: @SQ SN:1194 LN:247608 skipping SAM header line: @SQ SN:1195 LN:245812 skipping SAM header line: @SQ SN:1196 LN:246795 skipping SAM header line: @SQ SN:1197 LN:238806 skipping SAM header line: @SQ SN:1198 LN:249788 skipping SAM header line: @SQ SN:1199 LN:245639 skipping SAM header line: @SQ SN:1200 LN:227761 skipping SAM header line: @SQ SN:1201 LN:258942 skipping SAM header line: @SQ SN:1202 LN:245894 skipping SAM header line: @SQ SN:1203 LN:244832 skipping SAM header line: @SQ SN:1204 LN:249594 skipping SAM header line: @SQ SN:1205 LN:249635 skipping SAM header line: @SQ SN:1206 LN:207324 skipping SAM header line: @SQ SN:1207 LN:242447 skipping SAM header line: @SQ SN:1208 LN:244412 skipping SAM header line: @SQ SN:1209 LN:244226 skipping SAM header line: @SQ SN:1210 LN:244216 skipping SAM header line: @SQ SN:1211 LN:239629 skipping SAM header line: @SQ SN:1212 LN:244651 skipping SAM header line: @SQ SN:1213 LN:243815 skipping SAM header line: @SQ SN:1214 LN:243359 skipping SAM header line: @SQ SN:1215 LN:238664 skipping SAM header line: @SQ SN:1216 LN:243507 skipping SAM header line: @SQ SN:1217 LN:242809 skipping SAM header line: @SQ SN:1218 LN:238104 skipping SAM header line: @SQ SN:1219 LN:242556 skipping SAM header line: @SQ SN:1220 LN:241073 skipping SAM header line: @SQ SN:1221 LN:241080 skipping SAM header line: @SQ SN:1222 LN:240715 skipping SAM header line: @SQ SN:1223 LN:239944 skipping SAM header line: @SQ SN:1224 LN:239727 skipping SAM header line: @SQ SN:1225 LN:239609 skipping SAM header line: @SQ SN:1226 LN:240687 skipping SAM header line: @SQ SN:1227 LN:248535 skipping SAM header line: @SQ SN:1228 LN:239305 skipping SAM header line: @SQ SN:1229 LN:230757 skipping SAM header line: @SQ SN:1230 LN:230781 skipping SAM header line: @SQ SN:1231 LN:249113 skipping SAM header line: @SQ SN:1232 LN:226328 skipping SAM header line: @SQ SN:1233 LN:233084 skipping SAM header line: @SQ SN:1234 LN:237290 skipping SAM header line: @SQ SN:1235 LN:237493 skipping SAM header line: @SQ SN:1236 LN:229724 skipping SAM header line: @SQ SN:1237 LN:236229 skipping SAM header line: @SQ SN:1238 LN:236146 skipping SAM header line: @SQ SN:1239 LN:237731 skipping SAM header line: @SQ SN:1240 LN:241672 skipping SAM header line: @SQ SN:1241 LN:232445 skipping SAM header line: @SQ SN:1242 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line: @SQ SN:1284 LN:222312 skipping SAM header line: @SQ SN:1285 LN:222290 skipping SAM header line: @SQ SN:1286 LN:222330 skipping SAM header line: @SQ SN:1287 LN:221838 skipping SAM header line: @SQ SN:1288 LN:220876 skipping SAM header line: @SQ SN:1289 LN:220365 skipping SAM header line: @SQ SN:1290 LN:206787 skipping SAM header line: @SQ SN:1291 LN:220099 skipping SAM header line: @SQ SN:1292 LN:219750 skipping SAM header line: @SQ SN:1293 LN:219760 skipping SAM header line: @SQ SN:1294 LN:219466 skipping SAM header line: @SQ SN:1295 LN:219382 skipping SAM header line: @SQ SN:1296 LN:215092 skipping SAM header line: @SQ SN:1297 LN:216838 skipping SAM header line: @SQ SN:1298 LN:218543 skipping SAM header line: @SQ SN:1299 LN:212611 skipping SAM header line: @SQ SN:1300 LN:217951 skipping SAM header line: @SQ SN:1301 LN:217462 skipping SAM header line: @SQ SN:1302 LN:217925 skipping SAM header line: @SQ SN:1303 LN:217463 skipping SAM header line: @SQ SN:1304 LN:210190 skipping SAM header line: @SQ SN:1305 LN:212373 skipping SAM header line: @SQ SN:1306 LN:221073 skipping SAM header line: @SQ SN:1307 LN:214977 skipping SAM header line: @SQ SN:1308 LN:216126 skipping SAM header line: @SQ SN:1309 LN:215912 skipping SAM header line: @SQ SN:1310 LN:215931 skipping SAM header line: @SQ SN:1311 LN:209675 skipping SAM header line: @SQ SN:1312 LN:211880 skipping SAM header line: @SQ SN:1313 LN:214111 skipping SAM header line: @SQ SN:1314 LN:137261 skipping SAM header line: @SQ SN:1315 LN:214793 skipping SAM header line: @SQ SN:1316 LN:214403 skipping SAM header line: @SQ SN:1317 LN:136614 skipping SAM header line: @SQ SN:1318 LN:214485 skipping SAM header line: @SQ SN:1319 LN:213643 skipping SAM header line: @SQ SN:1320 LN:213370 skipping SAM header line: @SQ SN:1321 LN:213205 skipping SAM header line: @SQ SN:1322 LN:213610 skipping SAM header line: @SQ SN:1323 LN:190045 skipping SAM header line: @SQ SN:1324 LN:215809 skipping SAM header line: @SQ SN:1325 LN:212943 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skipping SAM header line: @SQ SN:1950 LN:107434 skipping SAM header line: @SQ SN:1951 LN:109332 skipping SAM header line: @SQ SN:1952 LN:109046 skipping SAM header line: @SQ SN:1953 LN:105147 skipping SAM header line: @SQ SN:1954 LN:108585 skipping SAM header line: @SQ SN:1955 LN:108589 skipping SAM header line: @SQ SN:1956 LN:108237 skipping SAM header line: @SQ SN:1957 LN:108255 skipping SAM header line: @SQ SN:1958 LN:94221 skipping SAM header line: @SQ SN:1959 LN:107760 skipping SAM header line: @SQ SN:1960 LN:107770 skipping SAM header line: @SQ SN:1961 LN:72473 skipping SAM header line: @SQ SN:1962 LN:107737 skipping SAM header line: @SQ SN:1963 LN:107637 skipping SAM header line: @SQ SN:1964 LN:107514 skipping SAM header line: @SQ SN:1965 LN:107577 skipping SAM header line: @SQ SN:1966 LN:107343 skipping SAM header line: @SQ SN:1967 LN:107240 skipping SAM header line: @SQ SN:1968 LN:107171 skipping SAM header line: @SQ SN:1969 LN:107244 skipping SAM header line: @SQ SN:1970 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line: @SQ SN:2012 LN:101749 skipping SAM header line: @SQ SN:2013 LN:101706 skipping SAM header line: @SQ SN:2014 LN:101561 skipping SAM header line: @SQ SN:2015 LN:101342 skipping SAM header line: @SQ SN:2016 LN:101336 skipping SAM header line: @SQ SN:2017 LN:101173 skipping SAM header line: @SQ SN:2018 LN:101223 skipping SAM header line: @SQ SN:2019 LN:100684 skipping SAM header line: @SQ SN:2020 LN:91334 skipping SAM header line: @SQ SN:2021 LN:100682 skipping SAM header line: @SQ SN:2022 LN:100541 skipping SAM header line: @SQ SN:2023 LN:100636 skipping SAM header line: @SQ SN:2024 LN:100324 skipping SAM header line: @SQ SN:2025 LN:100075 skipping SAM header line: @SQ SN:2026 LN:100242 skipping SAM header line: @SQ SN:2027 LN:100180 skipping SAM header line: @SQ SN:2028 LN:100026 skipping SAM header line: @SQ SN:2029 LN:100109 skipping SAM header line: @SQ SN:2030 LN:93285 skipping SAM header line: @SQ SN:2031 LN:100030 skipping SAM header line: @SQ SN:2032 LN:99985 skipping SAM 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@SQ SN:2309 LN:74323 skipping SAM header line: @SQ SN:2310 LN:74982 skipping SAM header line: @SQ SN:2311 LN:74353 skipping SAM header line: @SQ SN:2312 LN:74691 skipping SAM header line: @SQ SN:2313 LN:74675 skipping SAM header line: @SQ SN:2314 LN:74492 skipping SAM header line: @SQ SN:2315 LN:50290 skipping SAM header line: @SQ SN:2316 LN:74011 skipping SAM header line: @SQ SN:2317 LN:73882 skipping SAM header line: @SQ SN:2318 LN:75193 skipping SAM header line: @SQ SN:2319 LN:73805 skipping SAM header line: @SQ SN:2320 LN:73769 skipping SAM header line: @SQ SN:2321 LN:73753 skipping SAM header line: @SQ SN:2322 LN:73662 skipping SAM header line: @SQ SN:2323 LN:74196 skipping SAM header line: @SQ SN:2324 LN:73551 skipping SAM header line: @SQ SN:2325 LN:73591 skipping SAM header line: @SQ SN:2326 LN:73488 skipping SAM header line: @SQ SN:2327 LN:73490 skipping SAM header line: @SQ SN:2328 LN:73369 skipping SAM header line: @SQ SN:2329 LN:73213 skipping SAM header line: @SQ SN:2330 LN:73239 skipping SAM header line: @SQ SN:2331 LN:73044 skipping SAM header line: @SQ SN:2332 LN:72888 skipping SAM header line: @SQ SN:2333 LN:72835 skipping SAM header line: @SQ SN:2334 LN:73814 skipping SAM header line: @SQ SN:2335 LN:72803 skipping SAM header line: @SQ SN:2336 LN:72735 skipping SAM header line: @SQ SN:2337 LN:72548 skipping SAM header line: @SQ SN:2338 LN:72609 skipping SAM header line: @SQ SN:2339 LN:72639 skipping SAM header line: @SQ SN:2340 LN:72328 skipping SAM header line: @SQ SN:2341 LN:72089 skipping SAM header line: @SQ SN:2342 LN:72451 skipping SAM header line: @SQ SN:2343 LN:72309 skipping SAM header line: @SQ SN:2344 LN:72163 skipping SAM header line: @SQ SN:2345 LN:72087 skipping SAM header line: @SQ SN:2346 LN:71982 skipping SAM header line: @SQ SN:2347 LN:63031 skipping SAM header line: @SQ SN:2348 LN:71841 skipping SAM header line: @SQ SN:2349 LN:71745 skipping SAM header line: @SQ SN:2350 LN:71566 skipping SAM header line: @SQ SN:2351 LN:71677 skipping SAM header line: @SQ SN:2352 LN:71514 skipping SAM header line: @SQ SN:2353 LN:71418 skipping SAM header line: @SQ SN:2354 LN:71192 skipping SAM header line: @SQ SN:2355 LN:51418 skipping SAM header line: @SQ SN:2356 LN:71201 skipping SAM header line: @SQ SN:2357 LN:71145 skipping SAM header line: @SQ SN:2358 LN:70977 skipping SAM header line: @SQ SN:2359 LN:70908 skipping SAM header line: @SQ SN:2360 LN:70900 skipping SAM header line: @SQ SN:2361 LN:70675 skipping SAM header line: @SQ SN:2362 LN:70782 skipping SAM header line: @SQ SN:2363 LN:70767 skipping SAM header line: @SQ SN:2364 LN:73923 skipping SAM header line: @SQ SN:2365 LN:70381 skipping SAM header line: @SQ SN:2366 LN:70331 skipping SAM header line: @SQ SN:2367 LN:70113 skipping SAM header line: @SQ SN:2368 LN:70190 skipping SAM header line: @SQ SN:2369 LN:60170 skipping SAM header line: @SQ SN:2370 LN:69961 skipping SAM header line: @SQ SN:2371 LN:69943 skipping SAM header line: @SQ SN:2372 LN:69904 skipping SAM header line: @SQ SN:2373 LN:72714 skipping SAM header line: @SQ SN:2374 LN:51000 skipping SAM header line: @SQ SN:2375 LN:69928 skipping SAM header line: @SQ SN:2376 LN:69875 skipping SAM header line: @SQ SN:2377 LN:69864 skipping SAM header line: @SQ SN:2378 LN:69279 skipping SAM header line: @SQ SN:2379 LN:74065 skipping SAM header line: @SQ SN:2380 LN:69016 skipping SAM header line: @SQ SN:2381 LN:69052 skipping SAM header line: @SQ SN:2382 LN:68824 skipping SAM header line: @SQ SN:2383 LN:68944 skipping SAM header line: @SQ SN:2384 LN:68807 skipping SAM header line: @SQ SN:2385 LN:68778 skipping SAM header line: @SQ SN:2386 LN:68715 skipping SAM header line: @SQ SN:2387 LN:68753 skipping SAM header line: @SQ SN:2388 LN:68277 skipping SAM header line: @SQ SN:2389 LN:68411 skipping SAM header line: @SQ SN:2390 LN:68286 skipping SAM header line: @SQ SN:2391 LN:68313 skipping SAM header line: @SQ SN:2392 LN:68191 skipping SAM header line: @SQ SN:2393 LN:68142 skipping SAM header line: @SQ SN:2394 LN:68090 skipping SAM header line: @SQ SN:2395 LN:67843 skipping SAM header line: @SQ SN:2396 LN:67686 skipping SAM header line: @SQ SN:2397 LN:67503 skipping SAM header line: @SQ SN:2398 LN:67377 skipping SAM header line: @SQ SN:2399 LN:69652 skipping SAM header line: @SQ SN:2400 LN:67382 skipping SAM header line: @SQ SN:2401 LN:67227 skipping SAM header line: @SQ SN:2402 LN:67086 skipping SAM header line: @SQ SN:2403 LN:63474 skipping SAM header line: @SQ SN:2404 LN:66914 skipping SAM header line: @SQ SN:2405 LN:66873 skipping SAM header line: @SQ SN:2406 LN:66706 skipping SAM header line: @SQ SN:2407 LN:66661 skipping SAM header line: @SQ SN:2408 LN:66760 skipping SAM header line: @SQ SN:2409 LN:66509 skipping SAM header line: @SQ SN:2410 LN:66625 skipping SAM header line: @SQ SN:2411 LN:66645 skipping SAM header line: @SQ SN:2412 LN:62202 skipping SAM header line: @SQ SN:2413 LN:66442 skipping SAM header line: @SQ SN:2414 LN:65054 skipping SAM header line: @SQ SN:2415 LN:66437 skipping SAM header line: @SQ SN:2416 LN:66333 skipping SAM header line: @SQ SN:2417 LN:66134 skipping SAM header line: @SQ SN:2418 LN:46032 skipping SAM header line: @SQ SN:2419 LN:60888 skipping SAM header line: @SQ SN:2420 LN:67039 skipping SAM header line: @SQ SN:2421 LN:65507 skipping SAM header line: @SQ SN:2422 LN:65609 skipping SAM header line: @SQ SN:2423 LN:65455 skipping SAM header line: @SQ SN:2424 LN:63410 skipping SAM header line: @SQ SN:2425 LN:65452 skipping SAM header line: @SQ SN:2426 LN:65430 skipping SAM header line: @SQ SN:2427 LN:65196 skipping SAM header line: @SQ SN:2428 LN:65134 skipping SAM header line: @SQ SN:2429 LN:72116 skipping SAM header line: @SQ SN:2430 LN:64991 skipping SAM header line: @SQ SN:2431 LN:60442 skipping SAM header line: @SQ SN:2432 LN:65320 skipping SAM header line: @SQ SN:2433 LN:64820 skipping SAM header line: @SQ SN:2434 LN:64741 skipping SAM header line: @SQ SN:2435 LN:64578 skipping SAM header line: @SQ SN:2436 LN:64504 skipping SAM header line: @SQ SN:2437 LN:64524 skipping SAM header line: @SQ SN:2438 LN:35475 skipping SAM header line: @SQ SN:2439 LN:64140 skipping SAM header line: @SQ SN:2440 LN:63948 skipping SAM header line: @SQ SN:2441 LN:63161 skipping SAM header line: @SQ SN:2442 LN:63133 skipping SAM header line: @SQ SN:2443 LN:63012 skipping SAM header line: @SQ SN:2444 LN:62987 skipping SAM header line: @SQ SN:2445 LN:62913 skipping SAM header line: @SQ SN:2446 LN:62886 skipping SAM header line: @SQ SN:2447 LN:62732 skipping SAM header line: @SQ SN:2448 LN:62499 skipping SAM header line: @SQ SN:2449 LN:63847 skipping SAM header line: @SQ SN:2450 LN:63591 skipping SAM header line: @SQ SN:2451 LN:63586 skipping SAM header line: @SQ SN:2452 LN:63404 skipping SAM header line: @SQ SN:2453 LN:60537 skipping SAM header line: @SQ SN:2454 LN:63282 skipping SAM header line: @SQ SN:2455 LN:63224 skipping SAM header line: @SQ SN:2456 LN:63253 skipping SAM header line: @SQ SN:2457 LN:62472 skipping SAM header line: @SQ SN:2458 LN:62579 skipping SAM header line: @SQ SN:2459 LN:62232 skipping SAM header line: @SQ SN:2460 LN:62044 skipping SAM header line: @SQ SN:2461 LN:61835 skipping SAM header line: @SQ SN:2462 LN:62668 skipping SAM header line: @SQ SN:2463 LN:61805 skipping SAM header line: @SQ SN:2464 LN:61797 skipping SAM header line: @SQ SN:2465 LN:61717 skipping SAM header line: @SQ SN:2466 LN:61638 skipping SAM header line: @SQ SN:2467 LN:61777 skipping SAM header line: @SQ SN:2468 LN:61687 skipping SAM header line: @SQ SN:2469 LN:61605 skipping SAM header line: @SQ SN:2470 LN:61590 skipping SAM header line: @SQ SN:2471 LN:28960 skipping SAM header line: @SQ SN:2472 LN:61599 skipping SAM header line: @SQ SN:2473 LN:47108 skipping SAM header line: @SQ SN:2474 LN:61295 skipping SAM header line: @SQ SN:2475 LN:61249 skipping SAM header line: @SQ SN:2476 LN:61193 skipping SAM header line: @SQ SN:2477 LN:61411 skipping SAM header line: @SQ SN:2478 LN:61298 skipping SAM header line: @SQ SN:2479 LN:61848 skipping SAM header line: @SQ SN:2480 LN:61084 skipping SAM header line: @SQ SN:2481 LN:61128 skipping SAM header line: @SQ SN:2482 LN:60706 skipping SAM header line: @SQ SN:2483 LN:59495 skipping SAM header line: @SQ SN:2484 LN:60597 skipping SAM header line: @SQ SN:2485 LN:60583 skipping SAM header line: @SQ SN:2486 LN:60368 skipping SAM header line: @SQ SN:2487 LN:60399 skipping SAM header line: @SQ SN:2488 LN:62056 skipping SAM header line: @SQ SN:2489 LN:56950 skipping SAM header line: @SQ SN:2490 LN:60011 skipping SAM header line: @SQ SN:2491 LN:59962 skipping SAM header line: @SQ SN:2492 LN:59882 skipping SAM header line: @SQ SN:2493 LN:59253 skipping SAM header line: @SQ SN:2494 LN:59252 skipping SAM header line: @SQ SN:2495 LN:59219 skipping SAM header line: @SQ SN:2496 LN:58999 skipping SAM header line: @SQ SN:2497 LN:58997 skipping SAM header line: @SQ SN:2498 LN:58752 skipping SAM header line: @SQ SN:2499 LN:58758 skipping SAM header line: @SQ SN:2500 LN:58628 skipping SAM header line: @SQ SN:2501 LN:58602 skipping SAM header line: @SQ SN:2502 LN:58402 skipping SAM header line: @SQ SN:2503 LN:58186 skipping SAM header line: @SQ SN:2504 LN:58405 skipping SAM header line: @SQ SN:2505 LN:58107 skipping SAM header line: @SQ SN:2506 LN:57879 skipping SAM header line: @SQ SN:2507 LN:40414 skipping SAM header line: @SQ SN:2508 LN:57893 skipping SAM header line: @SQ SN:2509 LN:43660 skipping SAM header line: @SQ SN:2510 LN:55003 skipping SAM header line: @SQ SN:2511 LN:57791 skipping SAM header line: @SQ SN:2512 LN:57696 skipping SAM header line: @SQ SN:2513 LN:57587 skipping SAM header line: @SQ SN:2514 LN:57337 skipping SAM header line: @SQ SN:2515 LN:57213 skipping SAM header line: @SQ SN:2516 LN:57247 skipping SAM header line: @SQ SN:2517 LN:57178 skipping SAM header line: @SQ SN:2518 LN:57145 skipping SAM header line: @SQ SN:2519 LN:57168 skipping SAM header line: @SQ SN:2520 LN:57157 skipping SAM header line: @SQ SN:2521 LN:56997 skipping SAM header line: @SQ SN:2522 LN:56822 skipping SAM header line: @SQ SN:2523 LN:56732 skipping SAM header line: @SQ SN:2524 LN:56698 skipping SAM header line: @SQ SN:2525 LN:56638 skipping SAM header line: @SQ SN:2526 LN:56527 skipping SAM header line: @SQ SN:2527 LN:56505 skipping SAM header line: @SQ SN:2528 LN:56456 skipping SAM header line: @SQ SN:2529 LN:56347 skipping SAM header line: @SQ SN:2530 LN:56324 skipping SAM header line: @SQ SN:2531 LN:56231 skipping SAM header line: @SQ SN:2532 LN:56002 skipping SAM header line: @SQ SN:2533 LN:56066 skipping SAM header line: @SQ SN:2534 LN:56317 skipping SAM header line: @SQ SN:2535 LN:55885 skipping SAM header line: @SQ SN:2536 LN:45049 skipping SAM header line: @SQ SN:2537 LN:55791 skipping SAM header line: @SQ SN:2538 LN:56237 skipping SAM header line: @SQ SN:2539 LN:55598 skipping SAM header line: @SQ SN:2540 LN:55559 skipping SAM header line: @SQ SN:2541 LN:55525 skipping SAM header line: @SQ SN:2542 LN:52189 skipping SAM header line: @SQ SN:2543 LN:55486 skipping SAM header line: @SQ SN:2544 LN:55312 skipping SAM header line: @SQ SN:2545 LN:55384 skipping SAM header line: @SQ SN:2546 LN:55349 skipping SAM header line: @SQ SN:2547 LN:55186 skipping SAM header line: @SQ SN:2548 LN:55163 skipping SAM header line: @SQ SN:2549 LN:55129 skipping SAM header line: @SQ SN:2550 LN:55032 skipping SAM header line: @SQ SN:2551 LN:55074 skipping SAM header line: @SQ SN:2552 LN:55076 skipping SAM header line: @SQ SN:2553 LN:55091 skipping SAM header line: @SQ SN:2554 LN:54753 skipping SAM header line: @SQ SN:2555 LN:54671 skipping SAM header line: @SQ SN:2556 LN:54564 skipping SAM header line: @SQ SN:2557 LN:54475 skipping SAM header line: @SQ SN:2558 LN:54482 skipping SAM header line: @SQ SN:2559 LN:54554 skipping SAM header line: @SQ SN:2560 LN:54487 skipping SAM header line: @SQ SN:2561 LN:54494 skipping SAM header line: @SQ SN:2562 LN:54177 skipping SAM header line: @SQ SN:2563 LN:53804 skipping SAM header line: @SQ SN:2564 LN:53713 skipping SAM header line: @SQ SN:2565 LN:53419 skipping SAM header line: @SQ SN:2566 LN:53361 skipping SAM header line: @SQ SN:2567 LN:53262 skipping SAM header line: @SQ SN:2568 LN:53091 skipping SAM header line: @SQ SN:2569 LN:53047 skipping SAM header line: @SQ SN:2570 LN:53096 skipping SAM header line: @SQ SN:2571 LN:52905 skipping SAM header line: @SQ SN:2572 LN:52850 skipping SAM header line: @SQ SN:2573 LN:52888 skipping SAM header line: @SQ SN:2574 LN:52856 skipping SAM header line: @SQ SN:2575 LN:52629 skipping SAM header line: @SQ SN:2576 LN:52679 skipping SAM header line: @SQ SN:2577 LN:52580 skipping SAM header line: @SQ SN:2578 LN:52538 skipping SAM header line: @SQ SN:2579 LN:52440 skipping SAM header line: @SQ SN:2580 LN:52081 skipping SAM header line: @SQ SN:2581 LN:52024 skipping SAM header line: @SQ SN:2582 LN:51983 skipping SAM header line: @SQ SN:2583 LN:51881 skipping SAM header line: @SQ SN:2584 LN:51837 skipping SAM header line: @SQ SN:2585 LN:51927 skipping SAM header line: @SQ SN:2586 LN:51733 skipping SAM header line: @SQ SN:2587 LN:51794 skipping SAM header line: @SQ SN:2588 LN:51859 skipping SAM header line: @SQ SN:2589 LN:51243 skipping SAM header line: @SQ SN:2590 LN:51256 skipping SAM header line: @SQ SN:2591 LN:51279 skipping SAM header line: @SQ SN:2592 LN:64458 skipping SAM header line: @SQ SN:2593 LN:50849 skipping SAM header line: @SQ SN:2594 LN:50760 skipping SAM header line: @SQ SN:2595 LN:50806 skipping SAM header line: @SQ SN:2596 LN:51001 skipping SAM header line: @SQ SN:2597 LN:50563 skipping SAM header line: @SQ SN:2598 LN:50519 skipping SAM header line: @SQ SN:2599 LN:50416 skipping SAM header line: @SQ SN:2600 LN:50374 skipping SAM header line: @SQ SN:2601 LN:50290 skipping SAM header line: @SQ SN:2602 LN:50140 skipping SAM header line: @SQ SN:2603 LN:50173 skipping SAM header line: @SQ SN:2604 LN:35079 skipping SAM header line: @SQ SN:2605 LN:49651 skipping SAM header line: @SQ SN:2606 LN:49726 skipping SAM header line: @SQ SN:2607 LN:46404 skipping SAM header line: @SQ SN:2608 LN:55803 skipping SAM header line: @SQ SN:2609 LN:49558 skipping SAM header line: @SQ SN:2610 LN:49299 skipping SAM header line: @SQ SN:2611 LN:48994 skipping SAM header line: @SQ SN:2612 LN:48865 skipping SAM header line: @SQ SN:2613 LN:28643 skipping SAM header line: @SQ SN:2614 LN:48795 skipping SAM header line: @SQ SN:2615 LN:48658 skipping SAM header line: @SQ SN:2616 LN:48605 skipping SAM header line: @SQ SN:2617 LN:48564 skipping SAM header line: @SQ SN:2618 LN:48445 skipping SAM header line: @SQ SN:2619 LN:20839 skipping SAM header line: @SQ SN:2620 LN:48310 skipping SAM header line: @SQ SN:2621 LN:48235 skipping SAM header line: @SQ SN:2622 LN:48302 skipping SAM header line: @SQ SN:2623 LN:48222 skipping SAM header line: @SQ SN:2624 LN:48137 skipping SAM header line: @SQ SN:2625 LN:48114 skipping SAM header line: @SQ SN:2626 LN:48204 skipping SAM header line: @SQ SN:2627 LN:48083 skipping SAM header line: @SQ SN:2628 LN:47995 skipping SAM header line: @SQ SN:2629 LN:48056 skipping SAM header line: @SQ SN:2630 LN:47856 skipping SAM header line: @SQ SN:2631 LN:47977 skipping SAM header line: @SQ SN:2632 LN:29214 skipping SAM header line: @SQ SN:2633 LN:47735 skipping SAM header line: @SQ SN:2634 LN:47688 skipping SAM header line: @SQ SN:2635 LN:47602 skipping SAM header line: @SQ SN:2636 LN:47260 skipping SAM header line: @SQ SN:2637 LN:47128 skipping SAM header line: @SQ SN:2638 LN:46443 skipping SAM header line: @SQ SN:2639 LN:46937 skipping SAM header line: @SQ SN:2640 LN:46910 skipping SAM header line: @SQ SN:2641 LN:47107 skipping SAM header line: @SQ SN:2642 LN:46814 skipping SAM header line: @SQ SN:2643 LN:46873 skipping SAM header line: @SQ SN:2644 LN:46781 skipping SAM header line: @SQ SN:2645 LN:46567 skipping SAM header line: @SQ SN:2646 LN:45761 skipping SAM header line: @SQ SN:2647 LN:46105 skipping SAM header line: @SQ SN:2648 LN:50398 skipping SAM header line: @SQ SN:2649 LN:36369 skipping SAM header line: @SQ SN:2650 LN:22154 skipping SAM header line: @SQ SN:2651 LN:45583 skipping SAM header line: @SQ SN:2652 LN:45656 skipping SAM header line: @SQ SN:2653 LN:45551 skipping SAM header line: @SQ SN:2654 LN:45560 skipping SAM header line: @SQ SN:2655 LN:45557 skipping SAM header line: @SQ SN:2656 LN:45544 skipping SAM header line: @SQ SN:2657 LN:45566 skipping SAM header line: @SQ SN:2658 LN:45480 skipping SAM header line: @SQ SN:2659 LN:45186 skipping SAM header line: @SQ SN:2660 LN:44986 skipping SAM header line: @SQ SN:2661 LN:45117 skipping SAM header line: @SQ SN:2662 LN:44383 skipping SAM header line: @SQ SN:2663 LN:44319 skipping SAM header line: @SQ SN:2664 LN:44208 skipping SAM header line: @SQ SN:2665 LN:44136 skipping SAM header line: @SQ SN:2666 LN:44157 skipping SAM header line: @SQ SN:2667 LN:44272 skipping SAM header line: @SQ SN:2668 LN:43993 skipping SAM header line: @SQ SN:2669 LN:43822 skipping SAM header line: @SQ SN:2670 LN:43019 skipping SAM header line: @SQ SN:2671 LN:43763 skipping SAM header line: @SQ SN:2672 LN:43664 skipping SAM header line: @SQ SN:2673 LN:43312 skipping SAM header line: @SQ SN:2674 LN:43143 skipping SAM header line: @SQ SN:2675 LN:43262 skipping SAM header line: @SQ SN:2676 LN:42115 skipping SAM header line: @SQ SN:2677 LN:42699 skipping SAM header line: @SQ SN:2678 LN:42310 skipping SAM header line: @SQ SN:2679 LN:42434 skipping SAM header line: @SQ SN:2680 LN:42282 skipping SAM header line: @SQ SN:2681 LN:42143 skipping SAM header line: @SQ SN:2682 LN:42212 skipping SAM header line: @SQ SN:2683 LN:42102 skipping SAM header line: @SQ SN:2684 LN:41575 skipping SAM header line: @SQ SN:2685 LN:42072 skipping SAM header line: @SQ SN:2686 LN:41890 skipping SAM header line: @SQ SN:2687 LN:41612 skipping SAM header line: @SQ SN:2688 LN:41701 skipping SAM header line: @SQ SN:2689 LN:41743 skipping SAM header line: @SQ SN:2690 LN:41445 skipping SAM header line: @SQ SN:2691 LN:40977 skipping SAM header line: @SQ SN:2692 LN:40970 skipping SAM header line: @SQ SN:2693 LN:40788 skipping SAM header line: @SQ SN:2694 LN:40859 skipping SAM header line: @SQ SN:2695 LN:36056 skipping SAM header line: @SQ SN:2696 LN:41310 skipping SAM header line: @SQ SN:2697 LN:40757 skipping SAM header line: @SQ SN:2698 LN:40786 skipping SAM header line: @SQ SN:2699 LN:40693 skipping SAM header line: @SQ SN:2700 LN:40651 skipping SAM header line: @SQ SN:2701 LN:40341 skipping SAM header line: @SQ SN:2702 LN:34145 skipping SAM header line: @SQ SN:2703 LN:40252 skipping SAM header line: @SQ SN:2704 LN:40108 skipping SAM header line: @SQ SN:2705 LN:40076 skipping SAM header line: @SQ SN:2706 LN:42313 skipping SAM header line: @SQ SN:2707 LN:39949 skipping SAM header line: @SQ SN:2708 LN:22042 skipping SAM header line: @SQ SN:2709 LN:40066 skipping SAM header line: @SQ SN:2710 LN:39947 skipping SAM header line: @SQ SN:2711 LN:39822 skipping SAM header line: @SQ SN:2712 LN:39678 skipping SAM header line: @SQ SN:2713 LN:39685 skipping SAM header line: @SQ SN:2714 LN:39687 skipping SAM header line: @SQ SN:2715 LN:40113 skipping SAM header line: @SQ SN:2716 LN:39646 skipping SAM header line: @SQ SN:2717 LN:39568 skipping SAM header line: @SQ SN:2718 LN:39516 skipping SAM header line: @SQ SN:2719 LN:39573 skipping SAM header line: @SQ SN:2720 LN:39459 skipping SAM header line: @SQ SN:2721 LN:39299 skipping SAM header line: @SQ SN:2722 LN:39321 skipping SAM header line: @SQ SN:2723 LN:39247 skipping SAM header line: @SQ SN:2724 LN:39096 skipping SAM header line: @SQ SN:2725 LN:39259 skipping SAM header line: @SQ SN:2726 LN:33908 skipping SAM header line: @SQ SN:2727 LN:38739 skipping SAM header line: @SQ SN:2728 LN:38553 skipping SAM header line: @SQ SN:2729 LN:38767 skipping SAM header line: @SQ SN:2730 LN:38405 skipping SAM header line: @SQ SN:2731 LN:38624 skipping SAM header line: @SQ SN:2732 LN:38630 skipping SAM header line: @SQ SN:2733 LN:38409 skipping SAM header line: @SQ SN:2734 LN:38484 skipping SAM header line: @SQ SN:2735 LN:39368 skipping SAM header line: @SQ SN:2736 LN:38337 skipping SAM header line: @SQ SN:2737 LN:38241 skipping SAM header line: @SQ SN:2738 LN:38063 skipping SAM header line: @SQ SN:2739 LN:37935 skipping SAM header line: @SQ SN:2740 LN:37937 skipping SAM header line: @SQ SN:2741 LN:37931 skipping SAM header line: @SQ SN:2742 LN:37884 skipping SAM header line: @SQ SN:2743 LN:37767 skipping SAM header line: @SQ SN:2744 LN:37759 skipping SAM header line: @SQ SN:2745 LN:37629 skipping SAM header line: @SQ SN:2746 LN:37520 skipping SAM header line: @SQ SN:2747 LN:37435 skipping SAM header line: @SQ SN:2748 LN:37302 skipping SAM header line: @SQ SN:2749 LN:37274 skipping SAM header line: @SQ SN:2750 LN:37353 skipping SAM header line: @SQ SN:2751 LN:28772 skipping SAM header line: @SQ SN:2752 LN:37190 skipping SAM header line: @SQ SN:2753 LN:36574 skipping SAM header line: @SQ SN:2754 LN:37017 skipping SAM header line: @SQ SN:2755 LN:37166 skipping SAM header line: @SQ SN:2756 LN:37129 skipping SAM header line: @SQ SN:2757 LN:37086 skipping SAM header line: @SQ SN:2758 LN:36981 skipping SAM header line: @SQ SN:2759 LN:31857 skipping SAM header line: @SQ SN:2760 LN:36969 skipping SAM header line: @SQ SN:2761 LN:36928 skipping SAM header line: @SQ SN:2762 LN:36873 skipping SAM header line: @SQ SN:2763 LN:36802 skipping SAM header line: @SQ SN:2764 LN:29307 skipping SAM header line: @SQ SN:2765 LN:36665 skipping SAM header line: @SQ SN:2766 LN:36292 skipping SAM header line: @SQ SN:2767 LN:36431 skipping SAM header line: @SQ SN:2768 LN:35950 skipping SAM header line: @SQ SN:2769 LN:36089 skipping SAM header line: @SQ SN:2770 LN:35934 skipping SAM header line: @SQ SN:2771 LN:36099 skipping SAM header line: @SQ SN:2772 LN:36019 skipping SAM header line: @SQ SN:2773 LN:35602 skipping SAM header line: @SQ SN:2774 LN:35874 skipping SAM header line: @SQ SN:2775 LN:35924 skipping SAM header line: @SQ SN:2776 LN:35859 skipping SAM header line: @SQ SN:2777 LN:35905 skipping SAM header line: @SQ SN:2778 LN:35845 skipping SAM header line: @SQ SN:2779 LN:35758 skipping SAM header line: @SQ SN:2780 LN:35663 skipping SAM header line: @SQ SN:2781 LN:35699 skipping SAM header line: @SQ SN:2782 LN:35561 skipping SAM header line: @SQ SN:2783 LN:35490 skipping SAM header line: @SQ SN:2784 LN:35321 skipping SAM header line: @SQ SN:2785 LN:35327 skipping SAM header line: @SQ SN:2786 LN:35328 skipping SAM header line: @SQ SN:2787 LN:35244 skipping SAM header line: @SQ SN:2788 LN:35213 skipping SAM header line: @SQ SN:2789 LN:35134 skipping SAM header line: @SQ SN:2790 LN:35060 skipping SAM header line: @SQ SN:2791 LN:25419 skipping SAM header line: @SQ SN:2792 LN:35014 skipping SAM header line: @SQ SN:2793 LN:34995 skipping SAM header line: @SQ SN:2794 LN:34502 skipping SAM header line: @SQ SN:2795 LN:34637 skipping SAM header line: @SQ SN:2796 LN:34756 skipping SAM header line: @SQ SN:2797 LN:32114 skipping SAM header line: @SQ SN:2798 LN:34592 skipping SAM header line: @SQ SN:2799 LN:34646 skipping SAM header line: @SQ SN:2800 LN:34547 skipping SAM header line: @SQ SN:2801 LN:34564 skipping SAM header line: @SQ SN:2802 LN:34630 skipping SAM header line: @SQ SN:2803 LN:34403 skipping SAM header line: @SQ SN:2804 LN:34158 skipping SAM header line: @SQ SN:2805 LN:26329 skipping SAM header line: @SQ SN:2806 LN:34169 skipping SAM header line: @SQ SN:2807 LN:33949 skipping SAM header line: @SQ SN:2808 LN:33709 skipping SAM header line: @SQ SN:2809 LN:28512 skipping SAM header line: @SQ SN:2810 LN:28778 skipping SAM header line: @SQ SN:2811 LN:33400 skipping SAM header line: @SQ SN:2812 LN:33367 skipping SAM header line: @SQ SN:2813 LN:33309 skipping SAM header line: @SQ SN:2814 LN:33222 skipping SAM header line: @SQ SN:2815 LN:33065 skipping SAM header line: @SQ SN:2816 LN:33152 skipping SAM header line: @SQ SN:2817 LN:32899 skipping SAM header line: @SQ SN:2818 LN:33120 skipping SAM header line: 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skipping SAM header line: @SQ SN:3032 LN:20632 skipping SAM header line: @SQ SN:3033 LN:20540 skipping SAM header line: @SQ SN:3034 LN:20616 skipping SAM header line: @SQ SN:3035 LN:20535 skipping SAM header line: @SQ SN:3036 LN:20509 skipping SAM header line: @SQ SN:3037 LN:20511 skipping SAM header line: @SQ SN:3038 LN:20399 skipping SAM header line: @SQ SN:3039 LN:20437 skipping SAM header line: @SQ SN:3040 LN:20260 skipping SAM header line: @SQ SN:3041 LN:20304 skipping SAM header line: @SQ SN:3042 LN:20219 skipping SAM header line: @SQ SN:3043 LN:20160 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/froger/Mcap_Genome/ -p 4 -score_min L,0,-0.6 -u 10000000 --non_directional -1 /gscratch/srlab/sr320/data/froger/trim/Mc/Meth15.fastp-trim.202003065503_R1_001.fastq.gz -2 /gscratch/srlab/sr320/data/froger/trim/Mc/Meth15.fastp-trim.202003065503_R2_001.fastq.gz -o Mcap_full-u1M" Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 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Processed lines: 4500000 Processed lines: 4500000 Processed lines: 4500000 Processed lines: 4500000 Processed lines: 4500000 Processed lines: 4500000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Processed lines: 5000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt' Merging from these individual files: Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.1 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.2 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.3 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.4 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.5 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.6 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.7 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.8 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.9 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.10 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.11 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.12 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.13 Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.14 Processed 5321531 lines in total Total number of methylation call strings processed: 10643062 Final Cytosine Methylation Report ================================= Total number of C's analysed: 166062084 Total methylated C's in CpG context: 5185798 Total methylated C's in CHG context: 360653 Total methylated C's in CHH context: 920546 Total C to T conversions in CpG context: 31218782 Total C to T conversions in CHG context: 30372038 Total C to T conversions in CHH context: 98004267 C methylated in CpG context: 14.2% C methylated in CHG context: 1.2% C methylated in CHH context: 0.9% Merging individual M-bias reports into overall M-bias statistics from these 14 individual files: Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.1.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.2.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.3.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.4.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.5.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.6.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.7.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.8.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.9.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.10.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.11.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.12.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.13.mbias Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt.14.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 148 Maximum read length of Read 2: 146 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 148 Maximum read length of Read 2: 146 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CpG_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CHG_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept CHH_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt contains data -> kept Using these input files: CpG_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CpG_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CpG_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CpG_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CHG_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CHG_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CHG_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CHG_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CHH_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CHH_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CHH_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt CHH_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt /gscratch/scrubbed/sr320/030520-fr01/Mcap_full-u1M/nodedup/CpG_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt Writing bedGraph to file: Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Merging all input files and sorting everything in memory instead of writing out individual chromosome files... Writing all merged methylation calls to temp file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged Finished writing methylation calls from CpG_OT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_CTOT_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_CTOB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt to merged temp file Finished writing methylation calls from CpG_OB_Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.txt to merged temp file Sorting input file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged by positions (using -S of 75%) Successfully deleted the temporary input file Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.bedGraph.gz.methylation_calls.merged Finished BedGraph conversion ... Found 3 alignment reports in current directory. Now trying to figure out whether there are corresponding optional reports Writing Bismark HTML report to >> Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_PE_report.txt < Processing alignment report Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_PE_report.txt ... Complete No deduplication report file specified, skipping this step Using the following splitting report: > Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt < Processing splitting report Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe_splitting_report.txt ... Complete Using the following M-bias report: > Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.M-bias.txt < Processing M-bias report Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_PE_report.txt < Processing alignment report Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_PE_report.txt ... Complete No deduplication report file specified, skipping this step Using the following splitting report: > Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt < Processing splitting report Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe_splitting_report.txt ... Complete Using the following M-bias report: > Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.M-bias.txt < Processing M-bias report Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_pe.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_PE_report.txt < Processing alignment report Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_PE_report.txt ... Complete No deduplication report file specified, skipping this step Using the following splitting report: > Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt < Processing splitting report Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe_splitting_report.txt ... Complete Using the following M-bias report: > Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.M-bias.txt < Processing M-bias report Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_pe.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== No Bismark/Bowtie2 single-end BAM files detected Found Bismark/Bowtie2 paired-end files No Bismark/HISAT2 single-end BAM files detected No Bismark/HISAT2 paired-end BAM files detected Generating Bismark summary report from 3 Bismark BAM file(s)... >> Reading from Bismark report: Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_PE_report.txt No deduplication report present, skipping... No methylation extractor report present, skipping... >> Reading from Bismark report: Meth14.fastp-trim.202003064415_R1_001_bismark_bt2_PE_report.txt No deduplication report present, skipping... No methylation extractor report present, skipping... >> Reading from Bismark report: Meth15.fastp-trim.202003065503_R1_001_bismark_bt2_PE_report.txt No deduplication report present, skipping... No methylation extractor report present, skipping... Wrote Bismark project summary to >> bismark_summary_report.html << [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... Please provide the name of the output file using the option -o/--output filename xargs: /gscratch/srlab/programs/Bismark-0.21.0/coverage2cytosine: exited with status 255; aborting cat: *merged_CpG_evidence.cov: No such file or directory cat: *merged_CpG_evidence.cov: No such file or directory cat: *merged_CpG_evidence.cov: No such file or directory cat: *merged_CpG_evidence.cov: No such file or directory