File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated chgs Unmethylated chgs Methylated CHHs Unmethylated CHHs Meth10.fastp-trim.202003063900_R1_001_bismark_bt2_pe.bam 81884259 16579173 58817192 6487602 292 8033701 8545472 262016286 5355557 38663960 681300 46011489 2341388 168962592 Meth11.fastp-trim.202003065734_R1_001_bismark_bt2_pe.bam 55809314 1753803 53380684 674798 29 543344 1210459 37598881 823615 5515832 86740 6663115 301751 24207828 Meth12.fastp-trim.202003060645_R1_001_bismark_bt2_pe.bam 91925192 0 91925192 0 0 0 0 0 0 0 0 0 Meth13.fastp-trim.202003062040_R1_001_bismark_bt2_pe.bam 98707822 55417759 14281343 29008720 415 2730281770 72681585 506801931 3919017 501441629 10017051 1635420557 Meth16.fastp-trim.202003062412_R1_001_bismark_bt2_pe.bam 71022035 17855851 45741052 7425132 353 831847910 21720278 118443784 2347770 145792389 7887418 535656271 Meth17.fastp-trim.202003063731_R1_001_bismark_bt2_pe.bam 78388365 19359825 50604520 8424020 273 873966140 21218332 129235842 2381255 154077043 8173030 558880638 Meth18.fastp-trim.202003065117_R1_001_bismark_bt2_pe.bam 59341900 14104870 39697572 5539458 240 659422614 15258035 97209227 1725279 115712887 6008249 423508937