Bismark

Bismark Processing Report

/gscratch/srlab/sr320/data/froger/trim/Mc/Meth18.fastp-trim.202003065117_R1_001.fastq.gz and /gscratch/srlab/sr320/data/froger/trim/Mc/Meth18.fastp-trim.202003065117_R2_001.fastq.gz

Data processed at 10:51 on 2020-03-09

Alignment Stats

Sequence pairs analysed in total 59341900
Paired-end alignments with a unique best hit 14104870
Pairs without alignments under any condition 39697572
Pairs that did not map uniquely 5539458
Genomic sequence context not extractable (edges of chromosomes) 240

Cytosine Methylation

Total C's analysed 659422614
Methylated C's in CpG context 15258035
Methylated C's in CHG context 1725279
Methylated C's in CHH context 6008249
Methylated C's in Unknown context 583614
Unmethylated C's in CpG context 97209227
Unmethylated C's in CHG context 115712887
Unmethylated C's in CHH context 423508937
Unmethylated C's in Unknown context 2073310
Percentage methylation (CpG context) 13.6%
Percentage methylation (CHG context) 1.5%
Percentage methylation (CHH context) 1.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3455897 original top strand
CTOT 3587318 complementary to original top strand
CTOB 3590488 complementary to original bottom strand
OB 3470927 original bottom strand