Bismark

Bismark Processing Report

/gscratch/srlab/sr320/data/froger/trim/Mc/Meth17.fastp-trim.202003063731_R1_001.fastq.gz and /gscratch/srlab/sr320/data/froger/trim/Mc/Meth17.fastp-trim.202003063731_R2_001.fastq.gz

Data processed at 10:51 on 2020-03-09

Alignment Stats

Sequence pairs analysed in total 78388365
Paired-end alignments with a unique best hit 19359825
Pairs without alignments under any condition 50604520
Pairs that did not map uniquely 8424020
Genomic sequence context not extractable (edges of chromosomes) 273

Cytosine Methylation

Total C's analysed 873966140
Methylated C's in CpG context 21218332
Methylated C's in CHG context 2381255
Methylated C's in CHH context 8173030
Methylated C's in Unknown context 786259
Unmethylated C's in CpG context 129235842
Unmethylated C's in CHG context 154077043
Unmethylated C's in CHH context 558880638
Unmethylated C's in Unknown context 2896344
Percentage methylation (CpG context) 14.1%
Percentage methylation (CHG context) 1.5%
Percentage methylation (CHH context) 1.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4748276 original top strand
CTOT 4917675 complementary to original top strand
CTOB 4920678 complementary to original bottom strand
OB 4772923 original bottom strand