Bismark

Bismark Processing Report

/gscratch/srlab/sr320/data/froger/trim/Mc/Meth16.fastp-trim.202003062412_R1_001.fastq.gz and /gscratch/srlab/sr320/data/froger/trim/Mc/Meth16.fastp-trim.202003062412_R2_001.fastq.gz

Data processed at 10:51 on 2020-03-09

Alignment Stats

Sequence pairs analysed in total 71022035
Paired-end alignments with a unique best hit 17855851
Pairs without alignments under any condition 45741052
Pairs that did not map uniquely 7425132
Genomic sequence context not extractable (edges of chromosomes) 353

Cytosine Methylation

Total C's analysed 831847910
Methylated C's in CpG context 21720278
Methylated C's in CHG context 2347770
Methylated C's in CHH context 7887418
Methylated C's in Unknown context 800649
Unmethylated C's in CpG context 118443784
Unmethylated C's in CHG context 145792389
Unmethylated C's in CHH context 535656271
Unmethylated C's in Unknown context 2757619
Percentage methylation (CpG context) 15.5%
Percentage methylation (CHG context) 1.6%
Percentage methylation (CHH context) 1.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4399237 original top strand
CTOT 4512869 complementary to original top strand
CTOB 4517909 complementary to original bottom strand
OB 4425483 original bottom strand