/gscratch/srlab/sr320/data/froger/trim/Mc/Meth11.fastp-trim.202003065734_R1_001.fastq.gz and /gscratch/srlab/sr320/data/froger/trim/Mc/Meth11.fastp-trim.202003065734_R2_001.fastq.gz
Data processed at 10:51 on 2020-03-09
Alignment Stats
Sequence pairs analysed in total
55809314
Paired-end alignments with a unique best hit
1753832
Pairs without alignments under any condition
53380684
Pairs that did not map uniquely
674798
Genomic sequence context not extractable (edges of chromosomes)
29
Cytosine Methylation
Total C's analysed
81765934
Methylated C's in CpG context
1781666
Methylated C's in CHG context
188076
Methylated C's in CHH context
646329
Methylated C's in Unknown context
47916
Unmethylated C's in CpG context
12041967
Unmethylated C's in CHG context
14571661
Unmethylated C's in CHH context
52536235
Unmethylated C's in Unknown context
237161
Percentage methylation (CpG context)
12.9%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
405991
original top strand
CTOT
470482
complementary to original top strand
CTOB
471496
complementary to original bottom strand
OB
405834
original bottom strand
Deduplication
Alignments analysed
1753803
Unique alignments
1210459
Duplicates removed
543344
Duplicated alignments were found at 372282 different positions
