/gscratch/srlab/sr320/data/froger/trim/Mc/Meth10.fastp-trim.202003063900_R1_001.fastq.gz and /gscratch/srlab/sr320/data/froger/trim/Mc/Meth10.fastp-trim.202003063900_R2_001.fastq.gz
Data processed at 10:51 on 2020-03-09
Alignment Stats
Sequence pairs analysed in total
81884259
Paired-end alignments with a unique best hit
16579465
Pairs without alignments under any condition
58817192
Pairs that did not map uniquely
6487602
Genomic sequence context not extractable (edges of chromosomes)
292
Cytosine Methylation
Total C's analysed
766727977
Methylated C's in CpG context
15597730
Methylated C's in CHG context
1943098
Methylated C's in CHH context
6551324
Methylated C's in Unknown context
550110
Unmethylated C's in CpG context
113974264
Unmethylated C's in CHG context
135674473
Unmethylated C's in CHH context
492987088
Unmethylated C's in Unknown context
2355958
Percentage methylation (CpG context)
12.0%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3888257
original top strand
CTOT
4389764
complementary to original top strand
CTOB
4405867
complementary to original bottom strand
OB
3895285
original bottom strand
Deduplication
Alignments analysed
16579173
Unique alignments
8545472
Duplicates removed
8033701
Duplicated alignments were found at 4066044 different positions
