Alignment Stats
| Sequence pairs analysed in total |
66080050 |
| Paired-end alignments with a unique best hit |
40864254 |
| Pairs without alignments under any condition |
17443984 |
| Pairs that did not map uniquely |
7771812 |
| Genomic sequence context not extractable (edges of chromosomes) |
4618 |
|
|
Cytosine Methylation
| Total C's analysed |
1419038224 |
| Methylated C's in CpG context |
18570895 |
| Methylated C's in CHG context |
1217349 |
| Methylated C's in CHH context |
5287128 |
| Methylated C's in Unknown context |
46169 |
| Unmethylated C's in CpG context |
161989672 |
| Unmethylated C's in CHG context |
246538725 |
| Unmethylated C's in CHH context |
985434455 |
| Unmethylated C's in Unknown context |
3583396 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
10223885 |
original top strand |
| CTOT |
10220392 |
complementary to original top strand |
| CTOB |
10209054 |
complementary to original bottom strand |
| OB |
10206305 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
40859636 |
| Unique alignments |
33973996 |
| Duplicates removed |
6885640 |
| Duplicated alignments were found at 5802803 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
817176174 |
| Methylated C's in CpG context |
10367757 |
| Methylated C's in CHG context |
689165 |
| Methylated C's in CHH context |
3016470 |
| Unmethylated C's in CpG context |
92626062 |
| Unmethylated C's in CHG context |
140442001 |
| Unmethylated C's in CHH context |
570034719 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
