Alignment Stats
| Sequence pairs analysed in total |
84046138 |
| Paired-end alignments with a unique best hit |
52697723 |
| Pairs without alignments under any condition |
21102648 |
| Pairs that did not map uniquely |
10245767 |
| Genomic sequence context not extractable (edges of chromosomes) |
6162 |
|
|
Cytosine Methylation
| Total C's analysed |
1829680541 |
| Methylated C's in CpG context |
26942242 |
| Methylated C's in CHG context |
1595246 |
| Methylated C's in CHH context |
6910004 |
| Methylated C's in Unknown context |
63871 |
| Unmethylated C's in CpG context |
207856338 |
| Unmethylated C's in CHG context |
318664024 |
| Unmethylated C's in CHH context |
1267712687 |
| Unmethylated C's in Unknown context |
4444706 |
| Percentage methylation (CpG context) |
11.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
13201516 |
original top strand |
| CTOT |
13187576 |
complementary to original top strand |
| CTOB |
13148746 |
complementary to original bottom strand |
| OB |
13153723 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
52691561 |
| Unique alignments |
42631307 |
| Duplicates removed |
10060254 |
| Duplicated alignments were found at 8293421 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1011883701 |
| Methylated C's in CpG context |
14467262 |
| Methylated C's in CHG context |
867806 |
| Methylated C's in CHH context |
3772028 |
| Unmethylated C's in CpG context |
114149271 |
| Unmethylated C's in CHG context |
174285305 |
| Unmethylated C's in CHH context |
704342029 |
| Percentage methylation (CpG context) |
11.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
