Alignment Stats
| Sequence pairs analysed in total |
74728031 |
| Paired-end alignments with a unique best hit |
46408800 |
| Pairs without alignments under any condition |
19238137 |
| Pairs that did not map uniquely |
9081094 |
| Genomic sequence context not extractable (edges of chromosomes) |
4942 |
|
|
Cytosine Methylation
| Total C's analysed |
1612267900 |
| Methylated C's in CpG context |
23601594 |
| Methylated C's in CHG context |
1411700 |
| Methylated C's in CHH context |
6082043 |
| Methylated C's in Unknown context |
58589 |
| Unmethylated C's in CpG context |
183507479 |
| Unmethylated C's in CHG context |
281398346 |
| Unmethylated C's in CHH context |
1116266738 |
| Unmethylated C's in Unknown context |
4025578 |
| Percentage methylation (CpG context) |
11.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11572791 |
original top strand |
| CTOT |
11651127 |
complementary to original top strand |
| CTOB |
11633070 |
complementary to original bottom strand |
| OB |
11546870 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
46403858 |
| Unique alignments |
37965474 |
| Duplicates removed |
8438384 |
| Duplicated alignments were found at 7046567 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
906239667 |
| Methylated C's in CpG context |
12856588 |
| Methylated C's in CHG context |
779982 |
| Methylated C's in CHH context |
3380492 |
| Unmethylated C's in CpG context |
102427741 |
| Unmethylated C's in CHG context |
156416133 |
| Unmethylated C's in CHH context |
630378731 |
| Percentage methylation (CpG context) |
11.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
