Alignment Stats
| Sequence pairs analysed in total |
75413899 |
| Paired-end alignments with a unique best hit |
46810182 |
| Pairs without alignments under any condition |
19431447 |
| Pairs that did not map uniquely |
9172270 |
| Genomic sequence context not extractable (edges of chromosomes) |
5626 |
|
|
Cytosine Methylation
| Total C's analysed |
1630104169 |
| Methylated C's in CpG context |
22342159 |
| Methylated C's in CHG context |
1396332 |
| Methylated C's in CHH context |
5985810 |
| Methylated C's in Unknown context |
54371 |
| Unmethylated C's in CpG context |
188923130 |
| Unmethylated C's in CHG context |
285590712 |
| Unmethylated C's in CHH context |
1125866026 |
| Unmethylated C's in Unknown context |
4033588 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11686394 |
original top strand |
| CTOT |
11736215 |
complementary to original top strand |
| CTOB |
11722481 |
complementary to original bottom strand |
| OB |
11659466 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
46804556 |
| Unique alignments |
38089436 |
| Duplicates removed |
8715120 |
| Duplicated alignments were found at 7198771 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
914393917 |
| Methylated C's in CpG context |
12156816 |
| Methylated C's in CHG context |
771853 |
| Methylated C's in CHH context |
3334418 |
| Unmethylated C's in CpG context |
105012145 |
| Unmethylated C's in CHG context |
158378687 |
| Unmethylated C's in CHH context |
634739998 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
