File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated chgs Unmethylated chgs Methylated CHHs Unmethylated CHHs zr3534_10_R1.fastp-trim.20201202_bismark_bt2_pe.bam 77576026 48596708 19298592 9675341 5385 9102824 39493884 944375423 12141084 109564471 735626 164759511 3178623 653996108 zr3534_1_R1.fastp-trim.20201202_bismark_bt2_pe.bam 76522716 47694403 19741361 9081870 5082 8989521 38704882 925374274 12261150 106316812 780318 160195807 3368890 642451297 zr3534_2_R1.fastp-trim.20201202_bismark_bt2_pe.bam 75413899 46804556 19431447 9172270 5626 8715120 38089436 914393917 12156816 105012145 771853 158378687 3334418 634739998 zr3534_3_R1.fastp-trim.20201202_bismark_bt2_pe.bam 78091157 48195833 20842605 9046812 5907 8759881 39435952 968207655 14454056 108728598 837645 166427426 3609225 674150705 zr3534_4_R1.fastp-trim.20201202_bismark_bt2_pe.bam 74728031 46403858 19238137 9081094 4942 8438384 37965474 906239667 12856588 102427741 779982 156416133 3380492 630378731 zr3534_5_R1.fastp-trim.20201202_bismark_bt2_pe.bam 84046138 52691561 21102648 10245767 6162 10060254 42631307 1011883701 14467262 114149271 867806 174285305 3772028 704342029 zr3534_6_R1.fastp-trim.20201202_bismark_bt2_pe.bam 75321697 46094746 20284411 8936742 5798 8509718 37585028 907305363 11944399 102977222 766919 156115395 3343495 632157933 zr3534_7_R1.fastp-trim.20201202_bismark_bt2_pe.bam 66080050 40859636 17443984 7771812 4618 6885640 33973996 817176174 10367757 92626062 689165 140442001 3016470 570034719 zr3534_8_R1.fastp-trim.20201202_bismark_bt2_pe.bam 90605411 56427382 23113850 11058168 6011 11878429 44548953 1040603346 13392711 118181335 867715 178670030 3799441 725692114 zr3534_9_R1.fastp-trim.20201202_bismark_bt2_pe.bam 73776588 46244303 18427528 9099484 5273 8263057 37981246 906834456 11638273 104980361 720203 158340275 3089506 628065838