Alignment Stats
| Sequence pairs analysed in total |
73776588 |
| Paired-end alignments with a unique best hit |
46249576 |
| Pairs without alignments under any condition |
18427528 |
| Pairs that did not map uniquely |
9099484 |
| Genomic sequence context not extractable (edges of chromosomes) |
5273 |
|
|
Cytosine Methylation
| Total C's analysed |
1614930893 |
| Methylated C's in CpG context |
21402276 |
| Methylated C's in CHG context |
1304086 |
| Methylated C's in CHH context |
5550413 |
| Methylated C's in Unknown context |
49721 |
| Unmethylated C's in CpG context |
188596358 |
| Unmethylated C's in CHG context |
285271601 |
| Unmethylated C's in CHH context |
1112806159 |
| Unmethylated C's in Unknown context |
3962829 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11561829 |
original top strand |
| CTOT |
11578586 |
complementary to original top strand |
| CTOB |
11565150 |
complementary to original bottom strand |
| OB |
11538738 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
46244303 |
| Unique alignments |
37981246 |
| Duplicates removed |
8263057 |
| Duplicated alignments were found at 6888955 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
906834456 |
| Methylated C's in CpG context |
11638273 |
| Methylated C's in CHG context |
720203 |
| Methylated C's in CHH context |
3089506 |
| Unmethylated C's in CpG context |
104980361 |
| Unmethylated C's in CHG context |
158340275 |
| Unmethylated C's in CHH context |
628065838 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
