Alignment Stats
| Sequence pairs analysed in total |
90605411 |
| Paired-end alignments with a unique best hit |
56433393 |
| Pairs without alignments under any condition |
23113850 |
| Pairs that did not map uniquely |
11058168 |
| Genomic sequence context not extractable (edges of chromosomes) |
6011 |
|
|
Cytosine Methylation
| Total C's analysed |
1947268128 |
| Methylated C's in CpG context |
25821272 |
| Methylated C's in CHG context |
1643168 |
| Methylated C's in CHH context |
7125148 |
| Methylated C's in Unknown context |
65968 |
| Unmethylated C's in CpG context |
222451289 |
| Unmethylated C's in CHG context |
337884437 |
| Unmethylated C's in CHH context |
1352342814 |
| Unmethylated C's in Unknown context |
4853363 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
14026877 |
original top strand |
| CTOT |
14220103 |
complementary to original top strand |
| CTOB |
14186470 |
complementary to original bottom strand |
| OB |
13993932 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
56427382 |
| Unique alignments |
44548953 |
| Duplicates removed |
11878429 |
| Duplicated alignments were found at 9584750 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1040603346 |
| Methylated C's in CpG context |
13392711 |
| Methylated C's in CHG context |
867715 |
| Methylated C's in CHH context |
3799441 |
| Unmethylated C's in CpG context |
118181335 |
| Unmethylated C's in CHG context |
178670030 |
| Unmethylated C's in CHH context |
725692114 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
