Alignment Stats
| Sequence pairs analysed in total |
75321697 |
| Paired-end alignments with a unique best hit |
46100544 |
| Pairs without alignments under any condition |
20284411 |
| Pairs that did not map uniquely |
8936742 |
| Genomic sequence context not extractable (edges of chromosomes) |
5798 |
|
|
Cytosine Methylation
| Total C's analysed |
1608577636 |
| Methylated C's in CpG context |
21797457 |
| Methylated C's in CHG context |
1380274 |
| Methylated C's in CHH context |
5994483 |
| Methylated C's in Unknown context |
55865 |
| Unmethylated C's in CpG context |
184014825 |
| Unmethylated C's in CHG context |
279745904 |
| Unmethylated C's in CHH context |
1115644693 |
| Unmethylated C's in Unknown context |
4091675 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11519621 |
original top strand |
| CTOT |
11534009 |
complementary to original top strand |
| CTOB |
11527937 |
complementary to original bottom strand |
| OB |
11513179 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
46094746 |
| Unique alignments |
37585028 |
| Duplicates removed |
8509718 |
| Duplicated alignments were found at 7037435 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
907305363 |
| Methylated C's in CpG context |
11944399 |
| Methylated C's in CHG context |
766919 |
| Methylated C's in CHH context |
3343495 |
| Unmethylated C's in CpG context |
102977222 |
| Unmethylated C's in CHG context |
156115395 |
| Unmethylated C's in CHH context |
632157933 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
