Alignment Stats
| Sequence pairs analysed in total |
78091157 |
| Paired-end alignments with a unique best hit |
48201740 |
| Pairs without alignments under any condition |
20842605 |
| Pairs that did not map uniquely |
9046812 |
| Genomic sequence context not extractable (edges of chromosomes) |
5907 |
|
|
Cytosine Methylation
| Total C's analysed |
1687458901 |
| Methylated C's in CpG context |
25965647 |
| Methylated C's in CHG context |
1483141 |
| Methylated C's in CHH context |
6349411 |
| Methylated C's in Unknown context |
61887 |
| Unmethylated C's in CpG context |
190847734 |
| Unmethylated C's in CHG context |
293267693 |
| Unmethylated C's in CHH context |
1169545275 |
| Unmethylated C's in Unknown context |
4206961 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
12087376 |
original top strand |
| CTOT |
12043365 |
complementary to original top strand |
| CTOB |
12002567 |
complementary to original bottom strand |
| OB |
12062525 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
48195833 |
| Unique alignments |
39435952 |
| Duplicates removed |
8759881 |
| Duplicated alignments were found at 7279656 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
968207655 |
| Methylated C's in CpG context |
14454056 |
| Methylated C's in CHG context |
837645 |
| Methylated C's in CHH context |
3609225 |
| Unmethylated C's in CpG context |
108728598 |
| Unmethylated C's in CHG context |
166427426 |
| Unmethylated C's in CHH context |
674150705 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
