Alignment Stats
| Sequence pairs analysed in total |
76522716 |
| Paired-end alignments with a unique best hit |
47699485 |
| Pairs without alignments under any condition |
19741361 |
| Pairs that did not map uniquely |
9081870 |
| Genomic sequence context not extractable (edges of chromosomes) |
5082 |
|
|
Cytosine Methylation
| Total C's analysed |
1653706228 |
| Methylated C's in CpG context |
22660816 |
| Methylated C's in CHG context |
1421301 |
| Methylated C's in CHH context |
6086761 |
| Methylated C's in Unknown context |
53967 |
| Unmethylated C's in CpG context |
191604352 |
| Unmethylated C's in CHG context |
289632516 |
| Unmethylated C's in CHH context |
1142300482 |
| Unmethylated C's in Unknown context |
4118533 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11928000 |
original top strand |
| CTOT |
11941655 |
complementary to original top strand |
| CTOB |
11927676 |
complementary to original bottom strand |
| OB |
11897072 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
47694403 |
| Unique alignments |
38704882 |
| Duplicates removed |
8989521 |
| Duplicated alignments were found at 7455505 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
925374274 |
| Methylated C's in CpG context |
12261150 |
| Methylated C's in CHG context |
780318 |
| Methylated C's in CHH context |
3368890 |
| Unmethylated C's in CpG context |
106316812 |
| Unmethylated C's in CHG context |
160195807 |
| Unmethylated C's in CHH context |
642451297 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
