Alignment Stats
| Sequence pairs analysed in total |
77576026 |
| Paired-end alignments with a unique best hit |
48602093 |
| Pairs without alignments under any condition |
19298592 |
| Pairs that did not map uniquely |
9675341 |
| Genomic sequence context not extractable (edges of chromosomes) |
5385 |
|
|
Cytosine Methylation
| Total C's analysed |
1702743429 |
| Methylated C's in CpG context |
22574441 |
| Methylated C's in CHG context |
1346432 |
| Methylated C's in CHH context |
5774421 |
| Methylated C's in Unknown context |
52411 |
| Unmethylated C's in CpG context |
199259426 |
| Unmethylated C's in CHG context |
300535225 |
| Unmethylated C's in CHH context |
1173253484 |
| Unmethylated C's in Unknown context |
4171674 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
12157473 |
original top strand |
| CTOT |
12164131 |
complementary to original top strand |
| CTOB |
12137855 |
complementary to original bottom strand |
| OB |
12137249 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
48596708 |
| Unique alignments |
39493884 |
| Duplicates removed |
9102824 |
| Duplicated alignments were found at 7507433 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
944375423 |
| Methylated C's in CpG context |
12141084 |
| Methylated C's in CHG context |
735626 |
| Methylated C's in CHH context |
3178623 |
| Unmethylated C's in CpG context |
109564471 |
| Unmethylated C's in CHG context |
164759511 |
| Unmethylated C's in CHH context |
653996108 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
