12M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 13M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 16F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 19F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 22F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 23M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 29F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 31M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 35F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 36F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 39F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 3F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 41F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 44F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 48M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 50F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 52F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 53F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 54F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 59M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 64M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 6M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 76F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 77F_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 7M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504 9M_R1_val_1_bismark_bt2_pe Error: Sorted input specified, but the file /gscratch/srlab/sr320/data/Cvirg-genome/C_virginica-3.0_TE-all.gff has the following out of order record NC_035780.1 RepeatMasker similarity 2308659 2308718 21.7 - . Target "Motif:DNA-16_CGi" 445 504