Bismark

Bismark Processing Report

/gscratch/srlab/sr320/data/cg/zr3644_6_R1.fastp-trim.20201206.fq.gz and /gscratch/srlab/sr320/data/cg/zr3644_6_R2.fastp-trim.20201206.fq.gz

Data processed at 03:04 on 2021-02-21


Alignment Stats

Sequence pairs analysed in total 52883485
Paired-end alignments with a unique best hit 20160317
Pairs without alignments under any condition 27836055
Pairs that did not map uniquely 4887113
Genomic sequence context not extractable (edges of chromosomes) 807

Cytosine Methylation

Total C's analysed 718298612
Methylated C's in CpG context 10965060
Methylated C's in CHG context 562730
Methylated C's in CHH context 2250413
Methylated C's in Unknown context 4995
Unmethylated C's in CpG context 81037261
Unmethylated C's in CHG context 126317382
Unmethylated C's in CHH context 497165766
Unmethylated C's in Unknown context 501305
Percentage methylation (CpG context) 11.9%
Percentage methylation (CHG context) 0.4%
Percentage methylation (CHH context) 0.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5066119 original top strand
CTOT 5015207 complementary to original top strand
CTOB 5015651 complementary to original bottom strand
OB 5062533 original bottom strand