Bismark

Bismark Processing Report

/gscratch/srlab/sr320/data/cg/zr3644_4_R1.fastp-trim.20201206.fq.gz and /gscratch/srlab/sr320/data/cg/zr3644_4_R2.fastp-trim.20201206.fq.gz

Data processed at 03:04 on 2021-02-21


Alignment Stats

Sequence pairs analysed in total 49072984
Paired-end alignments with a unique best hit 18288301
Pairs without alignments under any condition 26298409
Pairs that did not map uniquely 4486274
Genomic sequence context not extractable (edges of chromosomes) 669

Cytosine Methylation

Total C's analysed 651332942
Methylated C's in CpG context 9707910
Methylated C's in CHG context 484408
Methylated C's in CHH context 1922996
Methylated C's in Unknown context 4291
Unmethylated C's in CpG context 73601851
Unmethylated C's in CHG context 113783118
Unmethylated C's in CHH context 451832659
Unmethylated C's in Unknown context 448038
Percentage methylation (CpG context) 11.7%
Percentage methylation (CHG context) 0.4%
Percentage methylation (CHH context) 0.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4594086 original top strand
CTOT 4547569 complementary to original top strand
CTOB 4551018 complementary to original bottom strand
OB 4594959 original bottom strand