Bismark

Bismark Processing Report

/gscratch/srlab/sr320/data/cg/zr3644_10_R1.fastp-trim.20201206.fq.gz and /gscratch/srlab/sr320/data/cg/zr3644_10_R2.fastp-trim.20201206.fq.gz

Data processed at 03:04 on 2021-02-21


Alignment Stats

Sequence pairs analysed in total 51598026
Paired-end alignments with a unique best hit 19467008
Pairs without alignments under any condition 27198263
Pairs that did not map uniquely 4932755
Genomic sequence context not extractable (edges of chromosomes) 884

Cytosine Methylation

Total C's analysed 692393511
Methylated C's in CpG context 11228231
Methylated C's in CHG context 541798
Methylated C's in CHH context 2141952
Methylated C's in Unknown context 5079
Unmethylated C's in CpG context 78888513
Unmethylated C's in CHG context 123028731
Unmethylated C's in CHH context 476564286
Unmethylated C's in Unknown context 476688
Percentage methylation (CpG context) 12.5%
Percentage methylation (CHG context) 0.4%
Percentage methylation (CHH context) 0.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4912865 original top strand
CTOT 4826893 complementary to original top strand
CTOB 4820832 complementary to original bottom strand
OB 4905534 original bottom strand