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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2021-02-27, 09:53 based on data in: /gscratch/scrubbed/sr320/021921-hw-bsnP


        General Statistics

        Showing 24/24 rows and 1/2 columns.
        Sample Name% Aligned
        zr3644_10_R1
        37.7%
        zr3644_11_R1
        37.7%
        zr3644_12_R1
        37.9%
        zr3644_13_R1
        37.7%
        zr3644_14_R1
        37.4%
        zr3644_15_R1
        38.1%
        zr3644_16_R1
        38.3%
        zr3644_17_R1
        38.5%
        zr3644_18_R1
        39.0%
        zr3644_19_R1
        38.1%
        zr3644_1_R1
        38.2%
        zr3644_20_R1
        34.2%
        zr3644_21_R1
        37.2%
        zr3644_22_R1
        38.6%
        zr3644_23_R1
        38.5%
        zr3644_24_R1
        38.5%
        zr3644_2_R1
        37.3%
        zr3644_3_R1
        37.5%
        zr3644_4_R1
        37.3%
        zr3644_5_R1
        36.8%
        zr3644_6_R1
        38.1%
        zr3644_7_R1
        37.2%
        zr3644_8_R1
        37.8%
        zr3644_9_R1
        38.8%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

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        Strand Alignment

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