File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated chgs Unmethylated chgs Methylated CHHs Unmethylated CHHs zr3644_10_R1.fastp-trim.20201206_bismark_bt2_pe.bam 51598026 19467008 27198263 4932755 884 692393511 11228231 78888513 541798 123028731 2141952 476564286 zr3644_11_R1.fastp-trim.20201206_bismark_bt2_pe.bam 55732442 21036214 29367085 5329143 975 745372684 11759767 84865286 583657 131980373 2301494 513882107 zr3644_12_R1.fastp-trim.20201206_bismark_bt2_pe.bam 46634543 17658705 24771302 4204536 742 621973155 8812032 69583720 461909 106686865 1882739 434545890 zr3644_13_R1.fastp-trim.20201206_bismark_bt2_pe.bam 52950721 19985416 28114199 4851106 903 714200604 11090841 80665715 566665 125693566 2241192 493942625 zr3644_14_R1.fastp-trim.20201206_bismark_bt2_pe.bam 36184563 13543064 19378814 3262685 540 480027296 8480484 53333962 392938 84692824 1533847 331593241 zr3644_15_R1.fastp-trim.20201206_bismark_bt2_pe.bam 58102004 22135736 30647323 5318945 911 787565112 13137960 88228425 629574 138512773 2500759 544555621 zr3644_16_R1.fastp-trim.20201206_bismark_bt2_pe.bam 50134077 19218821 25898695 5016561 779 672652797 10613837 76566493 526214 119341117 2064235 463540901 zr3644_17_R1.fastp-trim.20201206_bismark_bt2_pe.bam 57127374 21998260 29217690 5911424 949 784014626 12262703 90085935 633324 139670160 2500503 538862001 zr3644_18_R1.fastp-trim.20201206_bismark_bt2_pe.bam 50675924 19762420 26011820 4901684 854 702187735 11122944 79862407 563351 125026145 2209287 483403601 zr3644_19_R1.fastp-trim.20201206_bismark_bt2_pe.bam 48336315 18400790 25394391 4541134 762 651759091 9988466 74050719 513314 115263696 2038370 449904526 zr3644_1_R1.fastp-trim.20201206_bismark_bt2_pe.bam 50613363 19323467 26287539 5002357 913 683354629 9784856 78329567 517067 121315756 2042367 471365016 zr3644_20_R1.fastp-trim.20201206_bismark_bt2_pe.bam 53149153 18173439 30546046 4429668 687 646496659 10069414 73466096 516273 114151652 2038431 446254793 zr3644_21_R1.fastp-trim.20201206_bismark_bt2_pe.bam 50165026 18663451 26951097 4550478 815 663658625 10380882 75400080 523955 117225316 2065001 458063391 zr3644_22_R1.fastp-trim.20201206_bismark_bt2_pe.bam 46739729 18025102 24265313 4449314 746 644615809 10062264 73624566 520139 114700996 2039584 443668260 zr3644_23_R1.fastp-trim.20201206_bismark_bt2_pe.bam 39675229 15280432 20537283 3857514 685 541472367 8318708 61834458 431809 96009612 1705670 373172110 zr3644_24_R1.fastp-trim.20201206_bismark_bt2_pe.bam 51969546 20006798 27019300 4943448 858 715252030 11050092 81415730 570230 126881295 2241430 493093253 zr3644_2_R1.fastp-trim.20201206_bismark_bt2_pe.bam 54652876 20369855 29274584 5008437 871 732580403 11051885 82749931 565587 128234690 2253641 507724669 zr3644_3_R1.fastp-trim.20201206_bismark_bt2_pe.bam 38671370 14495047 20552780 3623543 662 516148236 7919903 58489919 395449 90789163 1573639 356980163 zr3644_4_R1.fastp-trim.20201206_bismark_bt2_pe.bam 49072984 18288301 26298409 4486274 669 651332942 9707910 73601851 484408 113783118 1922996 451832659 zr3644_5_R1.fastp-trim.20201206_bismark_bt2_pe.bam 43865548 16134171 23833705 3897672 631 575564351 8906914 64701267 449265 101216510 1780161 398510234 zr3644_6_R1.fastp-trim.20201206_bismark_bt2_pe.bam 52883485 20160317 27836055 4887113 807 718298612 10965060 81037261 562730 126317382 2250413 497165766 zr3644_7_R1.fastp-trim.20201206_bismark_bt2_pe.bam 81002273 30152005 43523098 7327170 1319 1073858102 16768704 120673829 841729 188146912 3357119 744069809 zr3644_8_R1.fastp-trim.20201206_bismark_bt2_pe.bam 42084665 15895747 22183581 4005337 652 563563445 8959468 63771689 452821 99628661 1795696 388955110 zr3644_9_R1.fastp-trim.20201206_bismark_bt2_pe.bam 47320068 18360604 24005782 4953682 767 640786458 10549037 73068267 492224 114281671 1931100 440464159