2_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.21.0
Bismark result file: paired-end (SAM format)
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 3572313 lines in total
Total number of methylation call strings processed: 7144626

Final Cytosine Methylation Report
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Total number of C's analysed:	94612719

Total methylated C's in CpG context:	442222
Total methylated C's in CHG context:	215315
Total methylated C's in CHH context:	918659

Total C to T conversions in CpG context:	12947538
Total C to T conversions in CHG context:	16123614
Total C to T conversions in CHH context:	63965371

C methylated in CpG context:	3.3%
C methylated in non-CpG context:	1.4%