Alignment Stats
| Sequence pairs analysed in total |
47320068 |
| Paired-end alignments with a unique best hit |
18360604 |
| Pairs without alignments under any condition |
24005782 |
| Pairs that did not map uniquely |
4953682 |
| Genomic sequence context not extractable (edges of chromosomes) |
767 |
|
|
Cytosine Methylation
| Total C's analysed |
640786458 |
| Methylated C's in CpG context |
10549037 |
| Methylated C's in CHG context |
492224 |
| Methylated C's in CHH context |
1931100 |
| Methylated C's in Unknown context |
4507 |
| Unmethylated C's in CpG context |
73068267 |
| Unmethylated C's in CHG context |
114281671 |
| Unmethylated C's in CHH context |
440464159 |
| Unmethylated C's in Unknown context |
431083 |
| Percentage methylation (CpG context) |
12.6% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4626246 |
original top strand |
| CTOT |
4555151 |
complementary to original top strand |
| CTOB |
4555509 |
complementary to original bottom strand |
| OB |
4622931 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
18359837 |
| Unique alignments |
16135565 |
| Duplicates removed |
2224272 |
| Duplicated alignments were found at 1958926 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
360970772 |
| Methylated C's in CpG context |
5802078 |
| Methylated C's in CHG context |
274442 |
| Methylated C's in CHH context |
1088151 |
| Unmethylated C's in CpG context |
40875939 |
| Unmethylated C's in CHG context |
63778463 |
| Unmethylated C's in CHH context |
249151699 |
| Percentage methylation (CpG context) |
12.4% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
