Alignment Stats
| Sequence pairs analysed in total |
42084665 |
| Paired-end alignments with a unique best hit |
15895747 |
| Pairs without alignments under any condition |
22183581 |
| Pairs that did not map uniquely |
4005337 |
| Genomic sequence context not extractable (edges of chromosomes) |
652 |
|
|
Cytosine Methylation
| Total C's analysed |
563563445 |
| Methylated C's in CpG context |
8959468 |
| Methylated C's in CHG context |
452821 |
| Methylated C's in CHH context |
1795696 |
| Methylated C's in Unknown context |
3900 |
| Unmethylated C's in CpG context |
63771689 |
| Unmethylated C's in CHG context |
99628661 |
| Unmethylated C's in CHH context |
388955110 |
| Unmethylated C's in Unknown context |
376750 |
| Percentage methylation (CpG context) |
12.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3991732 |
original top strand |
| CTOT |
3949846 |
complementary to original top strand |
| CTOB |
3953198 |
complementary to original bottom strand |
| OB |
4000319 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15895095 |
| Unique alignments |
14242845 |
| Duplicates removed |
1652250 |
| Duplicated alignments were found at 1478899 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
336126373 |
| Methylated C's in CpG context |
5237785 |
| Methylated C's in CHG context |
267711 |
| Methylated C's in CHH context |
1067626 |
| Unmethylated C's in CpG context |
37832107 |
| Unmethylated C's in CHG context |
58950807 |
| Unmethylated C's in CHH context |
232770337 |
| Percentage methylation (CpG context) |
12.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
