Alignment Stats
| Sequence pairs analysed in total |
81002273 |
| Paired-end alignments with a unique best hit |
30152005 |
| Pairs without alignments under any condition |
43523098 |
| Pairs that did not map uniquely |
7327170 |
| Genomic sequence context not extractable (edges of chromosomes) |
1319 |
|
|
Cytosine Methylation
| Total C's analysed |
1073858102 |
| Methylated C's in CpG context |
16768704 |
| Methylated C's in CHG context |
841729 |
| Methylated C's in CHH context |
3357119 |
| Methylated C's in Unknown context |
7582 |
| Unmethylated C's in CpG context |
120673829 |
| Unmethylated C's in CHG context |
188146912 |
| Unmethylated C's in CHH context |
744069809 |
| Unmethylated C's in Unknown context |
752422 |
| Percentage methylation (CpG context) |
12.2% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7566344 |
original top strand |
| CTOT |
7498585 |
complementary to original top strand |
| CTOB |
7510631 |
complementary to original bottom strand |
| OB |
7575126 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
30150686 |
| Unique alignments |
26850541 |
| Duplicates removed |
3300145 |
| Duplicated alignments were found at 2923521 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
644300662 |
| Methylated C's in CpG context |
9851900 |
| Methylated C's in CHG context |
499230 |
| Methylated C's in CHH context |
2005314 |
| Unmethylated C's in CpG context |
71957703 |
| Unmethylated C's in CHG context |
111910013 |
| Unmethylated C's in CHH context |
448076502 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
