Alignment Stats
| Sequence pairs analysed in total |
52883485 |
| Paired-end alignments with a unique best hit |
20160317 |
| Pairs without alignments under any condition |
27836055 |
| Pairs that did not map uniquely |
4887113 |
| Genomic sequence context not extractable (edges of chromosomes) |
807 |
|
|
Cytosine Methylation
| Total C's analysed |
718298612 |
| Methylated C's in CpG context |
10965060 |
| Methylated C's in CHG context |
562730 |
| Methylated C's in CHH context |
2250413 |
| Methylated C's in Unknown context |
4995 |
| Unmethylated C's in CpG context |
81037261 |
| Unmethylated C's in CHG context |
126317382 |
| Unmethylated C's in CHH context |
497165766 |
| Unmethylated C's in Unknown context |
501305 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5066119 |
original top strand |
| CTOT |
5015207 |
complementary to original top strand |
| CTOB |
5015651 |
complementary to original bottom strand |
| OB |
5062533 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
20159510 |
| Unique alignments |
17804674 |
| Duplicates removed |
2354836 |
| Duplicated alignments were found at 2080181 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
424685961 |
| Methylated C's in CpG context |
6360295 |
| Methylated C's in CHG context |
329265 |
| Methylated C's in CHH context |
1324855 |
| Unmethylated C's in CpG context |
47688586 |
| Unmethylated C's in CHG context |
74108907 |
| Unmethylated C's in CHH context |
294874053 |
| Percentage methylation (CpG context) |
11.8% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
|
|
