Alignment Stats
| Sequence pairs analysed in total |
43865548 |
| Paired-end alignments with a unique best hit |
16134171 |
| Pairs without alignments under any condition |
23833705 |
| Pairs that did not map uniquely |
3897672 |
| Genomic sequence context not extractable (edges of chromosomes) |
631 |
|
|
Cytosine Methylation
| Total C's analysed |
575564351 |
| Methylated C's in CpG context |
8906914 |
| Methylated C's in CHG context |
449265 |
| Methylated C's in CHH context |
1780161 |
| Methylated C's in Unknown context |
3885 |
| Unmethylated C's in CpG context |
64701267 |
| Unmethylated C's in CHG context |
101216510 |
| Unmethylated C's in CHH context |
398510234 |
| Unmethylated C's in Unknown context |
390437 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4010854 |
original top strand |
| CTOT |
4046584 |
complementary to original top strand |
| CTOB |
4055514 |
complementary to original bottom strand |
| OB |
4020588 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
16133540 |
| Unique alignments |
14477780 |
| Duplicates removed |
1655760 |
| Duplicated alignments were found at 1482966 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
347116867 |
| Methylated C's in CpG context |
5264304 |
| Methylated C's in CHG context |
268683 |
| Methylated C's in CHH context |
1069376 |
| Unmethylated C's in CpG context |
38821341 |
| Unmethylated C's in CHG context |
60538663 |
| Unmethylated C's in CHH context |
241154500 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
|
|
