Alignment Stats
| Sequence pairs analysed in total |
49072984 |
| Paired-end alignments with a unique best hit |
18288301 |
| Pairs without alignments under any condition |
26298409 |
| Pairs that did not map uniquely |
4486274 |
| Genomic sequence context not extractable (edges of chromosomes) |
669 |
|
|
Cytosine Methylation
| Total C's analysed |
651332942 |
| Methylated C's in CpG context |
9707910 |
| Methylated C's in CHG context |
484408 |
| Methylated C's in CHH context |
1922996 |
| Methylated C's in Unknown context |
4291 |
| Unmethylated C's in CpG context |
73601851 |
| Unmethylated C's in CHG context |
113783118 |
| Unmethylated C's in CHH context |
451832659 |
| Unmethylated C's in Unknown context |
448038 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4594086 |
original top strand |
| CTOT |
4547569 |
complementary to original top strand |
| CTOB |
4551018 |
complementary to original bottom strand |
| OB |
4594959 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
18287632 |
| Unique alignments |
16239837 |
| Duplicates removed |
2047795 |
| Duplicated alignments were found at 1825523 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
385896195 |
| Methylated C's in CpG context |
5636835 |
| Methylated C's in CHG context |
284080 |
| Methylated C's in CHH context |
1138667 |
| Unmethylated C's in CpG context |
43385065 |
| Unmethylated C's in CHG context |
66885343 |
| Unmethylated C's in CHH context |
268566205 |
| Percentage methylation (CpG context) |
11.5% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
