Alignment Stats
| Sequence pairs analysed in total |
38671370 |
| Paired-end alignments with a unique best hit |
14495047 |
| Pairs without alignments under any condition |
20552780 |
| Pairs that did not map uniquely |
3623543 |
| Genomic sequence context not extractable (edges of chromosomes) |
662 |
|
|
Cytosine Methylation
| Total C's analysed |
516148236 |
| Methylated C's in CpG context |
7919903 |
| Methylated C's in CHG context |
395449 |
| Methylated C's in CHH context |
1573639 |
| Methylated C's in Unknown context |
3552 |
| Unmethylated C's in CpG context |
58489919 |
| Unmethylated C's in CHG context |
90789163 |
| Unmethylated C's in CHH context |
356980163 |
| Unmethylated C's in Unknown context |
356073 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3626646 |
original top strand |
| CTOT |
3609892 |
complementary to original top strand |
| CTOB |
3623071 |
complementary to original bottom strand |
| OB |
3634776 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
14494385 |
| Unique alignments |
13056008 |
| Duplicates removed |
1438377 |
| Duplicated alignments were found at 1288794 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
312548188 |
| Methylated C's in CpG context |
4701641 |
| Methylated C's in CHG context |
237043 |
| Methylated C's in CHH context |
948037 |
| Unmethylated C's in CpG context |
35244801 |
| Unmethylated C's in CHG context |
54545872 |
| Unmethylated C's in CHH context |
216870794 |
| Percentage methylation (CpG context) |
11.8% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
