zr3644_2_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 17900177 lines in total Total number of methylation call strings processed: 35800354 Final Cytosine Methylation Report ================================= Total number of C's analysed: 440995801 Total methylated C's in CpG context: 6524098 Total methylated C's in CHG context: 336393 Total methylated C's in CHH context: 1347203 Total C to T conversions in CpG context: 49502508 Total C to T conversions in CHG context: 76570408 Total C to T conversions in CHH context: 306715191 C methylated in CpG context: 11.6% C methylated in CHG context: 0.4% C methylated in CHH context: 0.4%