Alignment Stats
| Sequence pairs analysed in total |
54652876 |
| Paired-end alignments with a unique best hit |
20369855 |
| Pairs without alignments under any condition |
29274584 |
| Pairs that did not map uniquely |
5008437 |
| Genomic sequence context not extractable (edges of chromosomes) |
871 |
|
|
Cytosine Methylation
| Total C's analysed |
732580403 |
| Methylated C's in CpG context |
11051885 |
| Methylated C's in CHG context |
565587 |
| Methylated C's in CHH context |
2253641 |
| Methylated C's in Unknown context |
5147 |
| Unmethylated C's in CpG context |
82749931 |
| Unmethylated C's in CHG context |
128234690 |
| Unmethylated C's in CHH context |
507724669 |
| Unmethylated C's in Unknown context |
520438 |
| Percentage methylation (CpG context) |
11.8% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5114698 |
original top strand |
| CTOT |
5071756 |
complementary to original top strand |
| CTOB |
5076555 |
complementary to original bottom strand |
| OB |
5105975 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
20368984 |
| Unique alignments |
17900177 |
| Duplicates removed |
2468807 |
| Duplicated alignments were found at 2167026 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
440995801 |
| Methylated C's in CpG context |
6524098 |
| Methylated C's in CHG context |
336393 |
| Methylated C's in CHH context |
1347203 |
| Unmethylated C's in CpG context |
49502508 |
| Unmethylated C's in CHG context |
76570408 |
| Unmethylated C's in CHH context |
306715191 |
| Percentage methylation (CpG context) |
11.6% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
