Alignment Stats
| Sequence pairs analysed in total |
51969546 |
| Paired-end alignments with a unique best hit |
20006798 |
| Pairs without alignments under any condition |
27019300 |
| Pairs that did not map uniquely |
4943448 |
| Genomic sequence context not extractable (edges of chromosomes) |
858 |
|
|
Cytosine Methylation
| Total C's analysed |
715252030 |
| Methylated C's in CpG context |
11050092 |
| Methylated C's in CHG context |
570230 |
| Methylated C's in CHH context |
2241430 |
| Methylated C's in Unknown context |
4893 |
| Unmethylated C's in CpG context |
81415730 |
| Unmethylated C's in CHG context |
126881295 |
| Unmethylated C's in CHH context |
493093253 |
| Unmethylated C's in Unknown context |
493097 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5025646 |
original top strand |
| CTOT |
4972004 |
complementary to original top strand |
| CTOB |
4978007 |
complementary to original bottom strand |
| OB |
5030283 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
20005940 |
| Unique alignments |
17708602 |
| Duplicates removed |
2297338 |
| Duplicated alignments were found at 2034991 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
424334642 |
| Methylated C's in CpG context |
6426886 |
| Methylated C's in CHG context |
334748 |
| Methylated C's in CHH context |
1323628 |
| Unmethylated C's in CpG context |
48012879 |
| Unmethylated C's in CHG context |
74644900 |
| Unmethylated C's in CHH context |
293591601 |
| Percentage methylation (CpG context) |
11.8% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
