Alignment Stats
| Sequence pairs analysed in total |
39675229 |
| Paired-end alignments with a unique best hit |
15280432 |
| Pairs without alignments under any condition |
20537283 |
| Pairs that did not map uniquely |
3857514 |
| Genomic sequence context not extractable (edges of chromosomes) |
685 |
|
|
Cytosine Methylation
| Total C's analysed |
541472367 |
| Methylated C's in CpG context |
8318708 |
| Methylated C's in CHG context |
431809 |
| Methylated C's in CHH context |
1705670 |
| Methylated C's in Unknown context |
3697 |
| Unmethylated C's in CpG context |
61834458 |
| Unmethylated C's in CHG context |
96009612 |
| Unmethylated C's in CHH context |
373172110 |
| Unmethylated C's in Unknown context |
370042 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3852890 |
original top strand |
| CTOT |
3784475 |
complementary to original top strand |
| CTOB |
3787300 |
complementary to original bottom strand |
| OB |
3855082 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15279747 |
| Unique alignments |
13580699 |
| Duplicates removed |
1699048 |
| Duplicated alignments were found at 1517509 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
319217422 |
| Methylated C's in CpG context |
4796647 |
| Methylated C's in CHG context |
251840 |
| Methylated C's in CHH context |
1001795 |
| Unmethylated C's in CpG context |
36244726 |
| Unmethylated C's in CHG context |
56117649 |
| Unmethylated C's in CHH context |
220804765 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
