Alignment Stats
| Sequence pairs analysed in total |
46739729 |
| Paired-end alignments with a unique best hit |
18025102 |
| Pairs without alignments under any condition |
24265313 |
| Pairs that did not map uniquely |
4449314 |
| Genomic sequence context not extractable (edges of chromosomes) |
746 |
|
|
Cytosine Methylation
| Total C's analysed |
644615809 |
| Methylated C's in CpG context |
10062264 |
| Methylated C's in CHG context |
520139 |
| Methylated C's in CHH context |
2039584 |
| Methylated C's in Unknown context |
4491 |
| Unmethylated C's in CpG context |
73624566 |
| Unmethylated C's in CHG context |
114700996 |
| Unmethylated C's in CHH context |
443668260 |
| Unmethylated C's in Unknown context |
443014 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4499080 |
original top strand |
| CTOT |
4503722 |
complementary to original top strand |
| CTOB |
4511659 |
complementary to original bottom strand |
| OB |
4509895 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
18024356 |
| Unique alignments |
16001443 |
| Duplicates removed |
2022913 |
| Duplicated alignments were found at 1800814 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
384123373 |
| Methylated C's in CpG context |
5860168 |
| Methylated C's in CHG context |
306457 |
| Methylated C's in CHH context |
1207901 |
| Unmethylated C's in CpG context |
43577975 |
| Unmethylated C's in CHG context |
67741077 |
| Unmethylated C's in CHH context |
265429795 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
