Alignment Stats
| Sequence pairs analysed in total |
50165026 |
| Paired-end alignments with a unique best hit |
18663451 |
| Pairs without alignments under any condition |
26951097 |
| Pairs that did not map uniquely |
4550478 |
| Genomic sequence context not extractable (edges of chromosomes) |
815 |
|
|
Cytosine Methylation
| Total C's analysed |
663658625 |
| Methylated C's in CpG context |
10380882 |
| Methylated C's in CHG context |
523955 |
| Methylated C's in CHH context |
2065001 |
| Methylated C's in Unknown context |
4757 |
| Unmethylated C's in CpG context |
75400080 |
| Unmethylated C's in CHG context |
117225316 |
| Unmethylated C's in CHH context |
458063391 |
| Unmethylated C's in Unknown context |
453397 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4685083 |
original top strand |
| CTOT |
4644136 |
complementary to original top strand |
| CTOB |
4643796 |
complementary to original bottom strand |
| OB |
4689621 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
18662636 |
| Unique alignments |
16594940 |
| Duplicates removed |
2067696 |
| Duplicated alignments were found at 1843565 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
399488670 |
| Methylated C's in CpG context |
6100968 |
| Methylated C's in CHG context |
311854 |
| Methylated C's in CHH context |
1238820 |
| Unmethylated C's in CpG context |
45081646 |
| Unmethylated C's in CHG context |
69907149 |
| Unmethylated C's in CHH context |
276848233 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
