Alignment Stats
| Sequence pairs analysed in total |
53149153 |
| Paired-end alignments with a unique best hit |
18173439 |
| Pairs without alignments under any condition |
30546046 |
| Pairs that did not map uniquely |
4429668 |
| Genomic sequence context not extractable (edges of chromosomes) |
687 |
|
|
Cytosine Methylation
| Total C's analysed |
646496659 |
| Methylated C's in CpG context |
10069414 |
| Methylated C's in CHG context |
516273 |
| Methylated C's in CHH context |
2038431 |
| Methylated C's in Unknown context |
4362 |
| Unmethylated C's in CpG context |
73466096 |
| Unmethylated C's in CHG context |
114151652 |
| Unmethylated C's in CHH context |
446254793 |
| Unmethylated C's in Unknown context |
410566 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4335552 |
original top strand |
| CTOT |
4741093 |
complementary to original top strand |
| CTOB |
4750989 |
complementary to original bottom strand |
| OB |
4345118 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
18172752 |
| Unique alignments |
16178353 |
| Duplicates removed |
1994399 |
| Duplicated alignments were found at 1781652 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
392050055 |
| Methylated C's in CpG context |
5957717 |
| Methylated C's in CHG context |
310331 |
| Methylated C's in CHH context |
1231939 |
| Unmethylated C's in CpG context |
44300730 |
| Unmethylated C's in CHG context |
68625359 |
| Unmethylated C's in CHH context |
271623979 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
