Alignment Stats
| Sequence pairs analysed in total |
50613363 |
| Paired-end alignments with a unique best hit |
19323467 |
| Pairs without alignments under any condition |
26287539 |
| Pairs that did not map uniquely |
5002357 |
| Genomic sequence context not extractable (edges of chromosomes) |
913 |
|
|
Cytosine Methylation
| Total C's analysed |
683354629 |
| Methylated C's in CpG context |
9784856 |
| Methylated C's in CHG context |
517067 |
| Methylated C's in CHH context |
2042367 |
| Methylated C's in Unknown context |
4191 |
| Unmethylated C's in CpG context |
78329567 |
| Unmethylated C's in CHG context |
121315756 |
| Unmethylated C's in CHH context |
471365016 |
| Unmethylated C's in Unknown context |
459827 |
| Percentage methylation (CpG context) |
11.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4886650 |
original top strand |
| CTOT |
4769500 |
complementary to original top strand |
| CTOB |
4774029 |
complementary to original bottom strand |
| OB |
4892375 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19322554 |
| Unique alignments |
17025672 |
| Duplicates removed |
2296882 |
| Duplicated alignments were found at 2019345 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
393879492 |
| Methylated C's in CpG context |
5522806 |
| Methylated C's in CHG context |
295264 |
| Methylated C's in CHH context |
1171018 |
| Unmethylated C's in CpG context |
44827263 |
| Unmethylated C's in CHG context |
69333931 |
| Unmethylated C's in CHH context |
272729210 |
| Percentage methylation (CpG context) |
11.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
