zr3644_19_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 16515106 lines in total Total number of methylation call strings processed: 33030212 Final Cytosine Methylation Report ================================= Total number of C's analysed: 393583006 Total methylated C's in CpG context: 5892422 Total methylated C's in CHG context: 306133 Total methylated C's in CHH context: 1222555 Total C to T conversions in CpG context: 44447937 Total C to T conversions in CHG context: 68992850 Total C to T conversions in CHH context: 272721109 C methylated in CpG context: 11.7% C methylated in CHG context: 0.4% C methylated in CHH context: 0.4%