Alignment Stats
| Sequence pairs analysed in total |
48336315 |
| Paired-end alignments with a unique best hit |
18400790 |
| Pairs without alignments under any condition |
25394391 |
| Pairs that did not map uniquely |
4541134 |
| Genomic sequence context not extractable (edges of chromosomes) |
762 |
|
|
Cytosine Methylation
| Total C's analysed |
651759091 |
| Methylated C's in CpG context |
9988466 |
| Methylated C's in CHG context |
513314 |
| Methylated C's in CHH context |
2038370 |
| Methylated C's in Unknown context |
4305 |
| Unmethylated C's in CpG context |
74050719 |
| Unmethylated C's in CHG context |
115263696 |
| Unmethylated C's in CHH context |
449904526 |
| Unmethylated C's in Unknown context |
448902 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4616366 |
original top strand |
| CTOT |
4578957 |
complementary to original top strand |
| CTOB |
4584321 |
complementary to original bottom strand |
| OB |
4620384 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
18400028 |
| Unique alignments |
16515106 |
| Duplicates removed |
1884922 |
| Duplicated alignments were found at 1685581 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
393583006 |
| Methylated C's in CpG context |
5892422 |
| Methylated C's in CHG context |
306133 |
| Methylated C's in CHH context |
1222555 |
| Unmethylated C's in CpG context |
44447937 |
| Unmethylated C's in CHG context |
68992850 |
| Unmethylated C's in CHH context |
272721109 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
