Alignment Stats
| Sequence pairs analysed in total |
50675924 |
| Paired-end alignments with a unique best hit |
19762420 |
| Pairs without alignments under any condition |
26011820 |
| Pairs that did not map uniquely |
4901684 |
| Genomic sequence context not extractable (edges of chromosomes) |
854 |
|
|
Cytosine Methylation
| Total C's analysed |
702187735 |
| Methylated C's in CpG context |
11122944 |
| Methylated C's in CHG context |
563351 |
| Methylated C's in CHH context |
2209287 |
| Methylated C's in Unknown context |
4640 |
| Unmethylated C's in CpG context |
79862407 |
| Unmethylated C's in CHG context |
125026145 |
| Unmethylated C's in CHH context |
483403601 |
| Unmethylated C's in Unknown context |
474810 |
| Percentage methylation (CpG context) |
12.2% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4968187 |
original top strand |
| CTOT |
4901333 |
complementary to original top strand |
| CTOB |
4914664 |
complementary to original bottom strand |
| OB |
4977382 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19761566 |
| Unique alignments |
17635969 |
| Duplicates removed |
2125597 |
| Duplicated alignments were found at 1897364 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
418432386 |
| Methylated C's in CpG context |
6485534 |
| Methylated C's in CHG context |
331791 |
| Methylated C's in CHH context |
1308830 |
| Unmethylated C's in CpG context |
47232125 |
| Unmethylated C's in CHG context |
73829736 |
| Unmethylated C's in CHH context |
289244370 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
|
|
