Alignment Stats
| Sequence pairs analysed in total |
57127374 |
| Paired-end alignments with a unique best hit |
21998260 |
| Pairs without alignments under any condition |
29217690 |
| Pairs that did not map uniquely |
5911424 |
| Genomic sequence context not extractable (edges of chromosomes) |
949 |
|
|
Cytosine Methylation
| Total C's analysed |
784014626 |
| Methylated C's in CpG context |
12262703 |
| Methylated C's in CHG context |
633324 |
| Methylated C's in CHH context |
2500503 |
| Methylated C's in Unknown context |
5428 |
| Unmethylated C's in CpG context |
90085935 |
| Unmethylated C's in CHG context |
139670160 |
| Unmethylated C's in CHH context |
538862001 |
| Unmethylated C's in Unknown context |
536395 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5508925 |
original top strand |
| CTOT |
5478994 |
complementary to original top strand |
| CTOB |
5489780 |
complementary to original bottom strand |
| OB |
5519612 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
21997311 |
| Unique alignments |
19345522 |
| Duplicates removed |
2651789 |
| Duplicated alignments were found at 2313416 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
460296504 |
| Methylated C's in CpG context |
7051331 |
| Methylated C's in CHG context |
367618 |
| Methylated C's in CHH context |
1456363 |
| Unmethylated C's in CpG context |
52422274 |
| Unmethylated C's in CHG context |
81263551 |
| Unmethylated C's in CHH context |
317735367 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
